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<div class="moz-cite-prefix">Reminder: we offer a free 20 minute
webinar tomorrow (Wednesday, 4PM BST) on what's available on Pre!<br>
<br>
Sign up here:<br>
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!important; float: none;"><span class="Apple-converted-space"> </span></span><a
href="https://attendee.gototraining.com/r/8084872084204567809"
id="registrationURL" target="_blank" style="margin: 0px;
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background-color: rgb(255, 255, 255);">https://attendee.gototraining.com/r/8084872084204567809</a><br>
<br>
Best wishes,<br>
Ensembl Outreach<br>
<br>
On 07/04/2014 16:20, Rhoda Kinsella wrote:<br>
</div>
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<div>Dear all,</div>
We are pleased to announce that the initial annotation of the new
human assembly, GRCh38, is now live on Ensembl Pre! <a
moz-do-not-send="true"
href="http://pre.ensembl.org/Homo_sapiens/Info/Index/">http://pre.ensembl.org/Homo_sapiens/Info/Index/</a><br>
<br>
<br>
<b>Highlights of GRCh38 Pre! include:</b>
<div>
<ul>
<li>Preliminary gene set including annotation on alternative
loci (e.g. MHC haplotypes, LRC region)</li>
<li>Centromeres covering 2% of the genome</li>
<li>GENCODE 19 models mapped from e!75 (i.e. from GRCh37)</li>
<li>CCDS models mapped from e!75</li>
<li>RefSeq annotation release 106 models</li>
<li>Human-specific cDNA and EST alignments</li>
<li>Computed consequences of variants overlapping an Ensembl
transcript using the projected Ensembl gene set (Download
GVF and VCF files from <a moz-do-not-send="true"
href="ftp://ftp.ensembl.org/pub/pre">Pre! FTP site</a>)</li>
<li>Computed consequences for variants overlapping NCBI’s
RefSeq transcripts (Download GVF and VCF files from <a
moz-do-not-send="true"
href="ftp://ftp.ensembl.org/pub/pre">Pre! FTP site</a>)</li>
<li>Pre! site has been updated to use Solr search</li>
</ul>
</div>
<div>
<div><br>
</div>
<div>In addition to human we're pleased to announce that we also
have Pre! sites available for <a moz-do-not-send="true"
href="http://pre.ensembl.org/Poecilia_formosa/Info/Index/">a</a><a
moz-do-not-send="true"
href="http://pre.ensembl.org/Poecilia_formosa/Info/Index/">mazon
molly</a>, <a moz-do-not-send="true"
href="http://pre.ensembl.org/Macaca_fascicularis/Info/Index/">crab-eating
macaque</a> and <a moz-do-not-send="true"
href="http://pre.ensembl.org/Erinaceus_europaeus/Info/Index/">hedgehog</a>.</div>
<div><br>
</div>
<div>Keep an eye out for further GRCh38 annotation updates by
checking the blog category <a moz-do-not-send="true"
href="http://www.ensembl.info/blog/category/genebuild/grch38/">GRCh38</a>. </div>
<div><br>
</div>
<div>The Ensembl Pre! blog post with details about the GRCh38
annotation can be viewed here: <a moz-do-not-send="true"
href="http://www.ensembl.info/blog/2014/04/07/pre-site-for-the-new-human-assembly-grch38-is-live/">http://www.ensembl.info/blog/2014/04/07/pre-site-for-the-new-human-assembly-grch38-is-live/</a></div>
<div><br>
</div>
<div>We'll be running a free 20 minute webinar about the data on
Ensembl Pre! on Wed 16 April at 4PM BST. To register, click
on the following link: <a moz-do-not-send="true"
href="https://attendee.gototraining.com/r/8084872084204567809">https://attendee.gototraining.com/r/8084872084204567809</a></div>
<div><br>
Regards,
<div>Rhoda</div>
</div>
</div>
<div><br>
</div>
<div><br>
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<div>Rhoda Kinsella Ph.D.</div>
<div>Ensembl Production Project Leader</div>
<div>European Bioinformatics Institute (EMBL-EBI)</div>
<div>European Molecular Biology Laboratory</div>
<div>Wellcome Trust Genome Campus</div>
<div>Hinxton,</div>
<div>Cambridge</div>
<div>CB10 1SD</div>
<div><br>
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