<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Volker<div><br></div><div>Many apologies for this. We already knew about it and I think you will find that the problem has already been rectified.</div><div><br></div><div>We have experienced a problem rsyncing tables after the healthchecks are performed. We have put in place a process which should prevent this in future.</div><div><br></div><div>Thanks</div><div><br></div><div>Nath</div><div><div><div><br></div><div><br></div><div>On 12 Aug 2010, at 10:33, <a href="mailto:volker.weinberger@novartis.com">volker.weinberger@novartis.com</a> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">
<br><font size="2" face="sans-serif">Dear Nathan,</font>
<br>
<br><font size="2" face="sans-serif">it appears that the same issue is again
present in Release 59, this time spotted in homo_sapiens_funcgen_59_37d,
drosophila_melanogaster_funcgen_59_525a, and mus_musculus_funcgen_59_37l,
which contain files like</font>
<br>
<br><font size="2" face="sans-serif">./mus_musculus_funcgen_59_37l/annotated_feature_view.txt.gz</font>
<br><font size="2" face="sans-serif">./mus_musculus_funcgen_59_37l/cs_sr_view.txt.gz</font>
<br><font size="2" face="sans-serif">./mus_musculus_funcgen_59_37l/external_feature_ox_view.txt.gz</font>
<br><font size="2" face="sans-serif">./mus_musculus_funcgen_59_37l/external_feature_view.txt.gz</font>
<br><font size="2" face="sans-serif">./mus_musculus_funcgen_59_37l/feature_set_view.txt.gz</font>
<br><font size="2" face="sans-serif">./mus_musculus_funcgen_59_37l/fs_displayable_view.txt.gz</font>
<br><font size="2" face="sans-serif">./mus_musculus_funcgen_59_37l/regulatory_feature_view.txt.gz</font>
<br>
<br><font size="2" face="sans-serif">Please drop.</font>
<br>
<br><font size="2" face="sans-serif">Thanks,</font>
<br>
<br><font size="2" face="sans-serif">Volker</font>
<br>
<br>
<br>
<br>
<br>
<br>
<table width="100%">
<tbody><tr valign="top">
<td width="40%"><font size="1" face="sans-serif"><b>Nathan Johnson <<a href="mailto:njohnson@ebi.ac.uk">njohnson@ebi.ac.uk</a>></b>
</font>
<br><font size="1" face="sans-serif">Sent by: <a href="mailto:owner-ensembl-dev@ebi.ac.uk">owner-ensembl-dev@ebi.ac.uk</a></font><p><font size="1" face="sans-serif">07.06.2010 12:39</font>
<table border="">
<tbody><tr valign="top">
<td bgcolor="white">
<div align="center"><font size="1" face="sans-serif">Please respond to<br>
<a href="mailto:ensembl-dev@ebi.ac.uk">ensembl-dev@ebi.ac.uk</a></font></div></td></tr></tbody></table>
<br>
</p></td><td width="59%">
<table width="100%">
<tbody><tr valign="top">
<td>
<div align="right"><font size="1" face="sans-serif">To</font></div>
</td><td><font size="1" face="sans-serif"><a href="mailto:ensembl-dev@ebi.ac.uk">ensembl-dev@ebi.ac.uk</a></font>
</td></tr><tr valign="top">
<td>
<div align="right"><font size="1" face="sans-serif">cc</font></div>
</td><td>
</td></tr><tr valign="top">
<td>
<div align="right"><font size="1" face="sans-serif">Subject</font></div>
</td><td><font size="1" face="sans-serif">Re: [ensembl-dev]REl 58 download issues:
snp_mart_58.sql</font></td></tr></tbody></table>
<br>
<table>
<tbody><tr valign="top">
<td>
</td><td></td></tr></tbody></table>
<br></td></tr></tbody></table>
<br>
<br>
<br><tt><font size="2">Hi Volker<br>
<br>
wrt the 'view' tables in the eFG DB. These are a by product of our
mart build process and should have been removed prior to release. They
must have slipped through our healthchecks somehow. They can be dropped.<br>
<br>
Thanks<br>
<br>
Nath<br>
<br>
On 7 Jun 2010, at 10:58, <a href="mailto:volker.weinberger@novartis.com">volker.weinberger@novartis.com</a> wrote:<br>
<br>
> <br>
> Hi, <br>
> <br>
> could you please verify the following files from the data download
area: <br>
> <br>
> - snp_mart_58.sql.gz: which currently defines only a
single table <br>
> - drosophila_melanogaster_funcgen_58_513b.sql.gz : some
table definitions may be missing, i.e. there are more data files (a number
of files named *view*) than table definitons. <br>
> <br>
> Thanks, <br>
> Volker<br>
> _________________________<br>
> <br>
> CONFIDENTIALITY NOTICE<br>
> <br>
> The information contained in this e-mail message is intended only
for the exclusive use of the individual or entity named above and may contain
information that is privileged, confidential or exempt from disclosure
under applicable law. If the reader of this message is not the intended
recipient, or the employee or agent responsible for delivery of the message
to the intended recipient, you are hereby notified that any dissemination,
distribution or copying of this communication is strictly prohibited. If
you have received this communication in error, please notify the sender
immediately by e-mail and delete the material from any computer. Thank
you.<br>
<br>
Nathan Johnson<br>
Scientific Programmer<br>
European Bioinformatics Institute<br>
Wellcome Trust Genome Campus<br>
Hinxton<br>
Cambridge CB10 1SD<br>
Email: <a href="mailto:njohnson@ebi.ac.uk">njohnson@ebi.ac.uk</a><br>
TelNo: (+44)1223 492629<br>
<br>
<br>
<br>
<br>
<br>
</font></tt>
<br><font size="2" face="sans-serif"><br>
_________________________<br>
<br>
CONFIDENTIALITY NOTICE<br>
<br>
The information contained in this e-mail message is intended only for the
exclusive use of the individual or entity named above and may contain information
that is privileged, confidential or exempt from disclosure under applicable
law. If the reader of this message is not the intended recipient, or the
employee or agent responsible for delivery of the message to the intended
recipient, you are hereby notified that any dissemination, distribution
or copying of this communication is strictly prohibited. If you have received
this communication in error, please notify the sender immediately by e-mail
and delete the material from any computer. Thank you.<br>
</font>_______________________________________________<br>Dev mailing list<br><a href="mailto:Dev@ensembl.org">Dev@ensembl.org</a><br>http://lists.ensembl.org/mailman/listinfo/dev<br></blockquote></div><br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><span class="Apple-style-span" style="border-collapse: separate; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; -webkit-text-decorations-in-effect: none; text-indent: 0px; -webkit-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><span class="Apple-style-span" style="border-collapse: separate; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; -webkit-text-decorations-in-effect: none; text-indent: 0px; -webkit-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><span class="Apple-style-span" style="border-collapse: separate; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; -webkit-text-decorations-in-effect: none; text-indent: 0px; -webkit-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><div>Nathan Johnson</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Scientific Programmer</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">European Bioinformatics Institute</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Wellcome Trust Genome Campus</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Hinxton</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Cambridge CB10 1SD</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Email: <a href="mailto:njohnson@ebi.ac.uk">njohnson@ebi.ac.uk</a></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">TelNo: (+44)1223 492629</div><div><br class="khtml-block-placeholder"></div><div><br class="khtml-block-placeholder"></div><br class="Apple-interchange-newline"></span></span></span></span><br class="Apple-interchange-newline">
</div>
<br></div></body></html>