<html xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns="http://www.w3.org/TR/REC-html40">
<head>
<META HTTP-EQUIV="Content-Type" CONTENT="text/html; charset=us-ascii">
<meta name=Generator content="Microsoft Word 11 (filtered medium)">
<style>
<!--
/* Style Definitions */
p.MsoNormal, li.MsoNormal, div.MsoNormal
{margin:0cm;
margin-bottom:.0001pt;
font-size:12.0pt;
font-family:"Times New Roman";}
a:link, span.MsoHyperlink
{color:blue;
text-decoration:underline;}
a:visited, span.MsoHyperlinkFollowed
{color:purple;
text-decoration:underline;}
span.EmailStyle17
{mso-style-type:personal-compose;
font-family:Arial;
color:windowtext;}
@page Section1
{size:612.0pt 792.0pt;
margin:72.0pt 90.0pt 72.0pt 90.0pt;}
div.Section1
{page:Section1;}
-->
</style>
</head>
<body lang=EN-US link=blue vlink=purple>
<div class=Section1>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Can anyone experienced with the EFG/Array Mapping
environment take a look at the below sample of my mysql sloq query log and tell
me whether it seems normal?<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>These are generated at the RunTranscriptXrefs stage.<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Thanks in advance, <o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Gavin<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'># Time: 100916 10:18:51<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'># User@Host: pipeline[pipeline] @ localhost []<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'># Query_time: 34.386525 Lock_time: 0.000231 Rows_sent: 23
Rows_examined: 13635438<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'>SET timestamp=1284628731;<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'>SELECT pf.probe_feature_id, pf.seq_region_id, pf.seq_region_start,
pf.seq_region_end, pf.seq_region_strand, pf.probe_id, pf.analysis_id,
pf.mismatches, pf.cigar_line, p.name, p.probe_set_id<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'>FROM (probe_feature pf, probe p, array_chip ac) <o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'> WHERE ac.array_id IN (56,52,54,55,53,58,57) and
ac.array_chip_id=p.array_chip_id AND pf.seq_region_id = 581 AND
pf.seq_region_start <= 40600181 AND pf.seq_region_end >= 40598166 AND
pf.seq_region_start >= 39437730 AND<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'> pf.probe_id = p.probe_id <o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'> GROUP by pf.probe_feature_id ORDER BY pf.seq_region_id,
pf.seq_region_start, pf.probe_feature_id;<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'># Time: 100916 10:19:26<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'># User@Host: pipeline[pipeline] @ localhost []<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'># Query_time: 34.402924 Lock_time: 0.000100 Rows_sent: 0
Rows_examined: 13635392<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'>SET timestamp=1284628766;<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'>SELECT pf.probe_feature_id, pf.seq_region_id, pf.seq_region_start,
pf.seq_region_end, pf.seq_region_strand, pf.probe_id, pf.analysis_id,
pf.mismatches, pf.cigar_line, p.name, p.probe_set_id<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'>FROM (probe_feature pf, probe p, array_chip ac) <o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'> WHERE ac.array_id IN (56,52,54,55,53,58,57) and
ac.array_chip_id=p.array_chip_id AND pf.seq_region_id = 581 AND
pf.seq_region_start <= 40728924 AND pf.seq_region_end >= 40727284 AND
pf.seq_region_start >= 39566848 AND<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'> pf.probe_id = p.probe_id <o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'> GROUP by pf.probe_feature_id ORDER BY pf.seq_region_id,
pf.seq_region_start, pf.probe_feature_id;<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'><o:p> </o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'># Time: 100916 10:20:00<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'># User@Host: pipeline[pipeline] @ localhost []<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'># Query_time: 34.280024 Lock_time: 0.000166 Rows_sent: 0
Rows_examined: 13635392<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'>SET timestamp=1284628800;<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'>SELECT pf.probe_feature_id, pf.seq_region_id, pf.seq_region_start,
pf.seq_region_end, pf.seq_region_strand, pf.probe_id, pf.analysis_id,
pf.mismatches, pf.cigar_line, p.name, p.probe_set_id<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'>FROM (probe_feature pf, probe p, array_chip ac) <o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'> WHERE ac.array_id IN (56,52,54,55,53,58,57) and
ac.array_chip_id=p.array_chip_id AND pf.seq_region_id = 581 AND
pf.seq_region_start <= 40750237 AND pf.seq_region_end >= 40747718 AND
pf.seq_region_start >= 39587282 AND<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'> pf.probe_id = p.probe_id <o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'> GROUP by pf.probe_feature_id ORDER BY pf.seq_region_id,
pf.seq_region_start, pf.probe_feature_id;<o:p></o:p></span></font></p>
</div>
</body>
</html>