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On 28/09/2010 14:22, Ken Youens-Clark wrote:
<blockquote
cite="mid:8AC5B21E-4402-45AF-8D82-80F9B2EF5C16@gmail.com"
type="cite">
<pre wrap="">I have a situation where a collaborator would like to make a GFF file of annotations and have their users go directly to a Location view in Gramene with the GFF loaded up as a new track. Is something like this currently possible with the Ensembl code, e.g., could they generate a URL like so:
<a class="moz-txt-link-freetext" href="http://www.gramene.org/Oryza_sativa/Location/View?r=1:1-100000">http://www.gramene.org/Oryza_sativa/Location/View?r=1:1-100000</a>;<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: 'Times New Roman'; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; font-size: medium;"><span class="Apple-style-span" style="color: rgb(85, 85, 85); font-family: Arial,sans-serif; font-size: 14px; font-weight: bold; line-height: 21px; text-align: left;">contigviewbottom=</span></span>url:<a class="moz-txt-link-freetext" href="http://brie.cshl.edu/kyc/rice_3514.gff=normal">http://brie.cshl.edu/kyc/rice_3514.gff=normal</a>
And see that file in the "url" arg (which actually exists and will display just fine if I upload it) automatically fetched and loaded for the user?
</pre>
</blockquote>
Ken,<br>
<br>
See the blog post at: <a
href="http://ensembl.blogspot.com/2008/11/linking-in-to-ensembl.html">http://ensembl.blogspot.com/2008/11/linking-in-to-ensembl.html</a>
it's slightly more complicated than your email above as you have to
indicate which of the two panels you are attaching the track to, so:<br>
<br>
<a class="moz-txt-link-freetext" href="http://www.gramene.org/Oryza_sativa/Location/View?r=1:1-100000">http://www.gramene.org/Oryza_sativa/Location/View?r=1:1-100000</a>;<span
class="Apple-style-span" style="border-collapse: separate; color:
rgb(0, 0, 0); font-family: 'Times New Roman'; font-style: normal;
font-variant: normal; font-weight: normal; letter-spacing: normal;
line-height: normal; orphans: 2; text-indent: 0px; text-transform:
none; white-space: normal; widows: 2; word-spacing: 0px;
font-size: medium;"><span class="Apple-style-span" style="color:
rgb(85, 85, 85); font-family: Arial,sans-serif; font-size: 14px;
font-weight: bold; line-height: 21px; text-align: left;">contigviewbottom=</span></span>url:<a class="moz-txt-link-freetext" href="http://brie.cshl.edu/kyc/rice_3514.gff=normal">http://brie.cshl.edu/kyc/rice_3514.gff=normal</a>
<br>
<br>
works<br>
<br>
James<br>
<br>
<br>
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