<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi,<div><br></div><div>I resend my message, hoping that maybe someone has any idea about how to draw custom gene tree with the ensemble API ? Any information could help !</div><div><br></div><div>Thanks,</div><div><br></div><div><br></div><div>Balazs Laurenczy<br><div><br><div>Début du message réexpédié :</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;"><span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1);"><b>De : </b></span><span style="font-family:'Helvetica'; font-size:medium;">Balazs Laurenczy <<a href="mailto:blaurenczy@gmail.com">blaurenczy@gmail.com</a>><br></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;"><span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1);"><b>Date : </b></span><span style="font-family:'Helvetica'; font-size:medium;">22 octobre 2010 16:07:47 HAEC<br></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;"><span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1);"><b>À : </b></span><span style="font-family:'Helvetica'; font-size:medium;"><a href="mailto:dev@ensembl.org">dev@ensembl.org</a><br></span></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px;"><span style="font-family:'Helvetica'; font-size:medium; color:rgba(0, 0, 0, 1);"><b>Objet : </b></span><span style="font-family:'Helvetica'; font-size:medium;"><b>GeneTree View</b><br></span></div><br><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><font class="Apple-style-span" face="Arial">Hi,</font><div><font class="Apple-style-span" face="Arial"><br></font></div><div><font class="Apple-style-span" face="Arial">I'm working o</font><font class="Apple-style-span" size="3"><span class="Apple-style-span" style="font-size: 13px;"><font class="Apple-style-span" face="Arial">n integrating the gene tree view into a website, using the perl API and the ensembl database. </font></span></font></div><div><font class="Apple-style-span" size="3"><span class="Apple-style-span" style="font-size: 13px;"><font class="Apple-style-span" face="Arial">I'd like to generate the gene tree view (only the image, the HTML map and the popup windows) and can't find the right way to access the methods in the perl API.</font></span></font></div><div><font class="Apple-style-span" face="Arial" size="3"><span class="Apple-style-span" style="font-size: 13px;"><br></span></font></div><div><font class="Apple-style-span" face="Arial" size="3"><span class="Apple-style-span" style="font-size: 13px;">Can someone explain in a few steps how to use the </span></font><span class="Apple-style-span" style="font-family: Monaco; font-size: 11px; ">EnsEMBL::Web::Component::Gene::ComparaTree</span><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; "> objects, as they seem to be the ones that generate the treeview, or any other objects :</span></div><div><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; "> - what argument do they need to be created ?</span></div><div><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; "> - what methods I need to use to generate the treeview and what they return ?</span></div><div><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; "> - how does the image generating process work ?</span></div><div><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; "><br></span></div><div><font class="Apple-style-span" face="Arial" size="3"><span class="Apple-style-span" style="font-size: 13px;">Sadly the documentation given by ensembl is quite poor on this part :-(</span></font></div><div><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; "><br></span></div><div><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; ">Thank you,</span></div><div><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; "><br></span></div><div><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; ">Bests,</span></div><div><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; "><br></span></div><div><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; "><br></span></div><div><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; ">Balazs Laurenczy</span></div></div></blockquote></div><br></div></body></html>