<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2"><font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">Hi,</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">I
try to build gene models for one 2x genome with a reference genome,</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">The
alignment and genomes slices are successfully generated, but i got
several warning messages by test_RunnableDB </span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">Does
this warning means that the setting for my database.pm is wrong?</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">There
are not examples for database.pm setting with low coverage genome
annotation pipeline, can someone supply me an example.</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">Thanks~</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">Wenkai</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><b><span style="background: #ffffff">the
error message is:</span></b></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">jiangwenkai@node69:~/oryza>
perl ~/ensembl/ensembl-pipeline/scripts/test_RunnableDB -dbuser jwk
-dbpass jwk -dbhost node69</span></font></font></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff"> <font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">/
-dbport 3307 -dbname oryza_glaberrima_core_6_59_1 -input_id
chromosome::9:9831700:9834758: -write -logic_name </span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff"> <font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">/
WGA2Genes -runnabledb_path Bio/EnsEMBL/Analysis/RunnableDB</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">Fetching
WGA2Genes from oryza_glaberrima_core_6_59_1</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">Fetching
WGA2Genes from oryza_glaberrima_core_6_59_1</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">Attaching
DNA_DB REFERENCE_DB to TARGET_CORE_DB...</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">Not
attaching DNA_DB to REFERENCE_DB ...</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">Attaching
DNA_DB oryza_glaberrima_core_6_59_1 to oryza_glaberrima_core_6_59_1</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">--------------------
WARNING ----------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">MSG:
You haven't defined a DNA_DBNAME in Config/Databases.pm </span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">FILE:
Analysis/RunnableDB/BaseGeneBuild.pm LINE: 211</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">CALLED
BY: Analysis/RunnableDB/WGA2Genes.pm LINE: 97</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">---------------------------------------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">--------------------
WARNING ----------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">MSG:
You haven't defined a DNA_DBNAME in Config/Databases.pm </span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">FILE:
Analysis/RunnableDB/BaseGeneBuild.pm LINE: 211</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">CALLED
BY: Analysis/RunnableDB/WGA2Genes.pm LINE: 99</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">---------------------------------------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">--------------------
WARNING ----------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">MSG:
Should not be an deletion and insertion on the same alignment region.
cigar_line=117M696I3D</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">FILE:
Bio/EnsEMBL/BaseAlignFeature.pm LINE: 793</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">CALLED
BY: Bio/EnsEMBL/BaseAlignFeature.pm LINE: 141</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">---------------------------------------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">--------------------
WARNING ----------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">MSG:
Cannot get attributes without an adaptor.</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">FILE:
Bio/EnsEMBL/Slice.pm LINE: 1159</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">CALLED
BY: Bio/EnsEMBL/Transcript.pm LINE: 1575</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">---------------------------------------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">--------------------
WARNING ----------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">MSG:
Cannot get attributes without an adaptor.</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">FILE:
Bio/EnsEMBL/Slice.pm LINE: 1159</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">CALLED
BY: Bio/EnsEMBL/Transcript.pm LINE: 1580</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">---------------------------------------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">--------------------
WARNING ----------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">MSG:
Cannot get attributes without an adaptor.</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">FILE:
Bio/EnsEMBL/Slice.pm LINE: 1159</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">CALLED
BY: Bio/EnsEMBL/Transcript.pm LINE: 1585</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">---------------------------------------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">--------------------
WARNING ----------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">MSG:
Cannot get attributes without an adaptor.</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">FILE:
Bio/EnsEMBL/Slice.pm LINE: 1159</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">CALLED
BY: Bio/EnsEMBL/Transcript.pm LINE: 1575</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">---------------------------------------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">--------------------
WARNING ----------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">MSG:
Cannot get attributes without an adaptor.</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">FILE:
Bio/EnsEMBL/Slice.pm LINE: 1159</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">CALLED
BY: Bio/EnsEMBL/Transcript.pm LINE: 1580</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">---------------------------------------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">--------------------
WARNING ----------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">MSG:
Cannot get attributes without an adaptor.</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">FILE:
Bio/EnsEMBL/Slice.pm LINE: 1159</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">CALLED
BY: Bio/EnsEMBL/Transcript.pm LINE: 1585</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">---------------------------------------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">Use
of uninitialized value in printf
Bio/EnsEMBL/Analysis/RunnableDB/WGA2Genes.pm line 1178.</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">Use
of uninitialized value in printf
Bio/EnsEMBL/Analysis/RunnableDB/WGA2Genes.pm line 1178.</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">Use
of uninitialized value in printf
Bio/EnsEMBL/Analysis/RunnableDB/WGA2Genes.pm line 1178.</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">--------------------
WARNING ----------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">MSG:
Cannot get attributes without an adaptor.</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">FILE:
Bio/EnsEMBL/Slice.pm LINE: 1159</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">CALLED
BY: Bio/EnsEMBL/Transcript.pm LINE: 1575</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">---------------------------------------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">--------------------
WARNING ----------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">MSG:
Cannot get attributes without an adaptor.</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">FILE:
Bio/EnsEMBL/Slice.pm LINE: 1159</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">CALLED
BY: Bio/EnsEMBL/Transcript.pm LINE: 1580</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">---------------------------------------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2">--------------------
WARNING ----------------------</p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">MSG:
Cannot get attributes without an adaptor.</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">FILE:
Bio/EnsEMBL/Slice.pm LINE: 1159</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">CALLED
BY: Bio/EnsEMBL/Transcript.pm LINE: 1585</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">---------------------------------------------------</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">There
is 1 features output</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><b><span style="background: #ffffff">But
the process did produce results for one agp file, which contain:</span></b></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">#</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">#
WGA2Genes output for chromosome::9:9831700:9834758:</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">#
Genes are: LOC_Os09g16120</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">#</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-AGP
#</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-AGP
## AGP for LOC_Os09g16120-0 source-region=9/9831700-9834758
(iid=chromosome::9:9831700:9834758:)</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-AGP
#</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-AGP
LOC_Os09g16120-0 1 494 1 W scaffold1369 5865 6358 -</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-AGP
LOC_Os09g16120-0 495 594 2 N 100</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-AGP
LOC_Os09g16120-0 595 3132 3 W scaffold1369 3212 5749 -</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-GENES
# Gene report for LOC_Os09g16120-0</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-GENES
##-ATTRIBUTE
transcript=LOC_Os09g16120-0.LOC_Os09g16120_LOC_Os09g16120.1
code=HitSimilarity value=96.3</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-GENES
##-ATTRIBUTE
transcript=LOC_Os09g16120-0.LOC_Os09g16120_LOC_Os09g16120.1
code=HitCoverage value=100.0</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-GENES
##-ATTRIBUTE
transcript=LOC_Os09g16120-0.LOC_Os09g16120_LOC_Os09g16120.1
code=PropNonGap value=100.0</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-GENES
##-ATTRIBUTE
transcript=LOC_Os09g16120-0.LOC_Os09g16120_LOC_Os09g16120.1
code=NonGapHCov value=100.0</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-GENES
##-ATTRIBUTE
transcript=LOC_Os09g16120-0.LOC_Os09g16120_LOC_Os09g16120.1
code=NumStops value=0</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-GENES
##-ATTRIBUTE
transcript=LOC_Os09g16120-0.LOC_Os09g16120_LOC_Os09g16120.1
code=GapExons value=0</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-GENES
##-ATTRIBUTE
transcript=LOC_Os09g16120-0.LOC_Os09g16120_LOC_Os09g16120.1
code=SourceTran value=LOC_Os09g16120.1</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-GENES
LOC_Os09g16120-0 WGA2Genes Exon 1793 1911 1 0 2
exon=LOC_Os09g16120-0.LOC_Os09g16120_L</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">OC_Os09g16120.1_0;
transcript=LOC_Os09g16120-0.LOC_Os09g16120_LOC_Os09g16120.1;
gene=LOC_Os09g16120-0.LOC_Os09g16120</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-GENES
LOC_Os09g16120-0 WGA2Genes Supporting 1793 1909 1
exon=LOC_Os09g16120-0.LOC_Os09g16120_LOC_Os09g</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">16120.1_0;
hname=LOC_Os09g16120.1; hstart=1; hend=39; external_db_id=;
hcoverage=100</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-GENES
LOC_Os09g16120-0 WGA2Genes Exon 2605 2674 1 2 0
exon=LOC_Os09g16120-0.LOC_Os09g16120_L</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">OC_Os09g16120.1_1;
transcript=LOC_Os09g16120-0.LOC_Os09g16120_LOC_Os09g16120.1;
gene=LOC_Os09g16120-0.LOC_Os09g16120</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-GENES
LOC_Os09g16120-0 WGA2Genes Supporting 2606 2674 1
exon=LOC_Os09g16120-0.LOC_Os09g16120_LOC_Os09g</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">16120.1_1;
hname=LOC_Os09g16120.1; hstart=41; hend=63; external_db_id=;
hcoverage=100</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-GENES
LOC_Os09g16120-0 WGA2Genes Exon 3012 3068 1 0 0
exon=LOC_Os09g16120-0.LOC_Os09g16120_L</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">OC_Os09g16120.1_2;
transcript=LOC_Os09g16120-0.LOC_Os09g16120_LOC_Os09g16120.1;
gene=LOC_Os09g16120-0.LOC_Os09g16120</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">##-GENES
LOC_Os09g16120-0 WGA2Genes Supporting 3012 3068 1
exon=LOC_Os09g16120-0.LOC_Os09g16120_LOC_Os09g</span></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">16120.1_2;
hname=LOC_Os09g16120.1; hstart=64; hend=82; external_db_id=;
hcoverage=100</span></font></font></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><br>
</p>
<p style="margin-bottom: 0in; font-style: normal; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><b><span style="background: #ffffff">The
following is the database specification in my pipeline: Are there any
errors?</span></b></font></font></font></p>
<p style="margin-bottom: 0in; font-style: normal; font-weight: medium; widows: 2; orphans: 2">
<font color="#000000"><font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="background: #ffffff">My
database.pm is set as:</span></font></font></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">TARGET_CORE_DB
=> {</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-dbname
=> 'oryza_glaberrima_core_6_59_1',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-host
=> 'node69',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-port
=> '3307',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-user
=> 'jwk',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-pass
=> 'jwk',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-species
=> 'Oryza glaberrima',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">},</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">QUERY_CORE_DB
=> {</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-dbname
=> 'oryza_sativa_core_6_59_6',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-host
=> 'node69',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-port
=> '3307',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-user
=> 'jwk',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-pass
=> 'jwk',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-species
=> 'Oryza sativa',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">},</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">COMPARA_DB
=> {</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-dbname
=> 'Coryza',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-host
=> 'node69',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-port
=> '3307',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-user
=> 'jwk',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-pass
=> 'jwk',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-species
=> 'Oryza glaberrima',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-species
=> 'Oryza sativa',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">},</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><br>
</p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><br>
</p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">REFERENCE_DB
=> {</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-dbname
=> 'oryza_glaberrima_core_6_59_1',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-host
=> 'node69',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-port
=> '3307',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-user
=> 'jwk',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">-pass
=> 'jwk',</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">},</span></span></font></font></span></font></p>
<p style="margin-bottom: 0in; widows: 2; orphans: 2"><font color="#000000"><span style="background: #ffffff">
<font face="tahoma, verdana, arial, helvetica, sans-serif"><font size="2" style="font-size: 9pt"><span style="font-style: normal"><span style="font-weight: medium">DNA_DBNAME
=> "REFERENCE_DB",</span></span></font></font></span></font></p><span></span><br><br>