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Hi Ankit, <br>
<br>
Do you have an ENSEMBL_BLAST_METHODS section in you DEFAULTS.ini?
The format of it has changed fairly recently, so it should now look
something like the example below: <br>
<br>
[ENSEMBL_BLAST_METHODS]<br>
BLASTN = [ blast dna dna ncbiblastn ] <br>
BLASTX = [ blast dna peptide ncbiblastx ]<br>
BLASTP = [ blast peptide peptide ncbiblastp ]<br>
TBLASTN = [ blast peptide dna ncbitblastn ]<br>
TBLASTX = [ blast dna dna ncbitblastx ]<br>
<br>
The 4th element of the array above corresponds to the
Bio::Tools::Run::Search wrapper class, so you will need to change
that depending on which blast type you are using and whether it is
local or not. <br>
<br>
Thanks,<br>
<br>
Nick<br>
<br>
On 18/11/10 09:13, Ankit Agrawal wrote:
<blockquote
cite="mid:AANLkTikxka4vOVPkdsPVY3Jv2nxWwHCdp+4030GLjRgO@mail.gmail.com"
type="cite">Hi,<br>
<br>
I am setting up Ensembl - Blastview (ver 59).<br>
The setup for ensembl is complete and is running perfectly without
any error logs.<br>
Now, when i am trying to set-up BLAST view on that, I am getting
the following error.<br>
<br>
<font size="1"><span style="font-family: courier new,monospace;">-------------
EXCEPTION: Bio::Root::Exception -------------</span><br
style="font-family: courier new,monospace;">
<span style="font-family: courier new,monospace;">MSG: Need a
method arg</span><br style="font-family: courier
new,monospace;">
<span style="font-family: courier new,monospace;">STACK:
Error::throw</span><br style="font-family: courier
new,monospace;">
<span style="font-family: courier new,monospace;">STACK:
Bio::Root::Root::throw
/media/Data/cvs.ensembl59/bioperl-live/Bio/Root/Root.pm:342</span><br
style="font-family: courier new,monospace;">
<span style="font-family: courier new,monospace;">STACK:
Bio::Tools::Run::Search::new
/media/Data/cvs.ensembl59/modules/Bio/Tools/Run/Search.pm:126</span><br
style="font-family: courier new,monospace;">
<span style="font-family: courier new,monospace;">STACK:
/media/Data/cvs.ensembl59/modules/EnsEMBL/Web/BlastView/MetaDataBlast.pm:409</span><br
style="font-family: courier new,monospace;">
<span style="font-family: courier new,monospace;">-----------------------------------------------------------</span></font><br>
<br>
I know, I have made some config errors. However, I am unable to
interpret it.<br>
It would be grateful if someone who has done this recently can
help me on this.<br>
I just want the basic Blast view running.<br>
If anybody can provide me with the working Default.ini and any one
species.ini or just the basic mandatory configurations, it will be
VERY VERY helpful.<br>
I am in critical phase of the project and this needs to be done
urgently.<br>
Please help me in any way you can!<br>
<br>
<br clear="all">
<br>
Thanks and Regards,<br>
ANKIT AGRAWAL<br>
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</blockquote>
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