<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Hardip,<div><br></div><div>The genes/transcripts with these biotypes are from Vega. The Vega website has a definition for each of their biotypes:</div><div><a href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html</a></div><div><br></div><div>Cheers,</div><div>Bronwen</div><div><br></div><div><br><div><div>On 6 Dec 2010, at 21:50, Hardip Patel wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>
<font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:11pt">Hi All<br>
<br>
I was just wondering if somebody can help me with the description of following gene biotypes. I was also interested in knowing what would be the evidence for/against any of these biotypes.<br>
<br>
<br>
</span></font><font face="Verdana, Helvetica, Arial"><span style="font-size:12pt">ambiguous_orf</span></font><font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:10.5pt"> <br>
</span></font><font face="Verdana, Helvetica, Arial"><span style="font-size:12pt">antisense</span></font><font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:10.5pt"> <br>
</span></font><font face="Verdana, Helvetica, Arial"><span style="font-size:12pt">retained_intron</span></font><font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:10.5pt"> <br>
</span></font><font face="Verdana, Helvetica, Arial"><span style="font-size:12pt">retrotransposed</span></font><font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:10.5pt"> <br>
</span></font><font face="Verdana, Helvetica, Arial"><span style="font-size:12pt">TEC</span></font><font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:10.5pt"> <br>
</span></font><font face="Verdana, Helvetica, Arial"><span style="font-size:12pt">transcribed_processed_pseudogene</span></font><font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:10.5pt"> <br>
</span></font><font face="Verdana, Helvetica, Arial"><span style="font-size:12pt">transcribed_unprocessed_pseudogene</span></font><font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:10.5pt"> <br>
</span></font><font face="Verdana, Helvetica, Arial"><span style="font-size:12pt">TR_gene</span></font><font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:10.5pt"> <br>
</span></font><font face="Verdana, Helvetica, Arial"><span style="font-size:12pt">TR_pseudogene</span></font><font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:10.5pt"> <br>
</span></font><font face="Verdana, Helvetica, Arial"><span style="font-size:12pt">unitary_pseudogene</span></font><font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:10.5pt"> <br>
</span></font><font face="Verdana, Helvetica, Arial"><span style="font-size:12pt">unprocessed_pseudogene</span></font><font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:10.5pt"> <br>
</span></font><font face="Verdana, Helvetica, Arial"><span style="font-size:12pt">nonsense_mediated_decay<br>
<br>
Any help is greatly appreciated.<br>
Thanking you<br>
</span></font><font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:11pt"><br>
-- <br>
</span><span style="font-size:12pt">Hardip R. Patel<br>
</span><span style="font-size:11pt">Bioinformatician, Molecular Genetics Division,<br>
Victor Chang Cardiac Research Institute,<br>
Darlinghurst, NSW – 2010, Australia<br>
(W): +61 – 2 – 9295 8611<br>
(M): 0449 180 715<br>
<br>
</span></font>
</div>
_______________________________________________<br>Dev mailing list<br><a href="mailto:Dev@ensembl.org">Dev@ensembl.org</a><br>http://lists.ensembl.org/mailman/listinfo/dev<br></blockquote></div><br></div></body></html>