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Hi Steve<br>
<br>
Thanks for getting back. You are right, the biomart site is alright
now. But still have issues with mysql server.<br>
<br>
xxx@xxx-vm:~$ mysql -uanonymous -hmartdb.ensembl.org -P5316<br>
Welcome to the MySQL monitor. Commands end with ; or \g.<br>
Your MySQL connection id is 85312<br>
Server version: 5.1.34 Source distribution<br>
<br>
Type 'help;' or '\h' for help. Type '\c' to clear the buffer.<br>
<br>
mysql> use vega_mart_61;<br>
Reading table information for completion of table and column names<br>
You can turn off this feature to get a quicker startup with -A<br>
<br>
Database changed<br>
mysql> use ensembl_mart_61;<br>
Reading table information for completion of table and column names<br>
You can turn off this feature to get a quicker startup with -A<br>
<br>
===<br>
I have waited here for more than 10 minutes, still it doesn't
switch. vega_mart_61 seems to be fine, but not able to use
ensembl_mart_61.<br>
<br>
Not sure if it has to do with my vms memory. Anyway, I can still go
ahead with the biomart service.<br>
<br>
Thanks<br>
Prem<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
On 21/02/11 23:32, steve trevanion wrote:
<blockquote cite="mid:4D62F5F8.8080206@sanger.ac.uk" type="cite">
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http-equiv="Content-Type">
Hi Prem,<br>
<br>
Ensembl does not maintain the biomart website, please see <a
moz-do-not-send="true" class="moz-txt-link-freetext"
href="http://www.biomart.org/contact.html">http://www.biomart.org/contact.html</a>.
However their site does now appear to be OK<br>
<br>
We do maintain martdb.ensembl.org and that is responding fine for
me. We have not had any other reports of problems, can you confirm
you are using port 5316 ?<br>
<br>
Regards,<br>
<br>
Steve<br>
<br>
On 21/02/2011 17:35, Premanand Achuthan wrote:
<blockquote cite="mid:4D62A259.2000003@cimr.cam.ac.uk" type="cite">
<meta http-equiv="content-type" content="text/html;
charset=ISO-8859-1">
Hi All<br>
<br>
I have been trying to use biomart (<a moz-do-not-send="true"
href="http://www.biomart.org/biomart/martview/">http://www.biomart.org/biomart/martview/</a>)
since afternoon, and I keep getting the following message <br>
'<span class="Apple-style-span" style="border-collapse:
separate; color: rgb(0, 0, 0); font-family: 'Times New Roman';
font-style: normal; font-variant: normal; font-weight: normal;
letter-spacing: normal; line-height: normal; orphans: 2;
text-indent: 0px; text-transform: none; white-space: normal;
widows: 2; word-spacing: 0px; font-size: medium;"><span
class="Apple-style-span" style="font-family: sans-serif;">Serious
Error: Could not connect to mysql database ensembl_mart_61:
DBI
connect('database=ensembl_mart_61;host=dcc-qa-db.oicr.on.ca;port=3306','bm_web',...)
failed: Can't connect to MySQL server on
'dcc-qa-db.oicr.on.ca' (113) at
/srv/biomart_server/biomart.org/biomart-perl/lib/BioMart/Configuration/DBLocation.pm
line 98'<br>
<br>
Also not able to connect to </span></span>martdb.ensembl.org.ensembl_mart_61
through mysql client.<br>
<br>
Anybody having similar issues?<br>
<br>
Thanks<br>
Prem<br>
<br>
<br>
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<pre wrap="">
<fieldset class="mimeAttachmentHeader"></fieldset>
_______________________________________________
Dev mailing list
<a class="moz-txt-link-abbreviated" href="mailto:Dev@ensembl.org">Dev@ensembl.org</a>
<a class="moz-txt-link-freetext" href="http://lists.ensembl.org/mailman/listinfo/dev">http://lists.ensembl.org/mailman/listinfo/dev</a>
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