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Dear all,<br>
First thank you for any suggestion.<br>
We are trying to get genes overlapping with segments comprised
between two SNPs.<br>
Input = rsID from start snp, rsID for end snp (as shown below).<br>
Expected output : gene IDs<br>
<br>
Example:<br>
<pre wrap="">query: rs_ID_1---------------------------rs_ID_2
<-----------gene_1------------->
<-------gene_2--------->
<-----------gene_3------------->
It would return : gene_1, gene_2, gene_3
</pre>
<br>
We would like to perform this in a unique query (e.g. not with a
first query SNP >> coordinates followed by a second
coordinates >>> genes).<br>
<br>
We tried this using Biomart (db=Homo sapiens Variation (dbSNP
132;ENSEMBL); Filters: REGION/Marker-end-start; Attributes: any ID)
without success (it returns a null output). In a general way,
nothing happens when using this filter.<br>
<br>
So here comes our questions:<br>
- how to use this filter ?<br>
- do you have any suggestion for doing this ?<br>
<br>
<br>
Best regards,<br>
MM<br>
<br>
<br>
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<span class="ds16">Dr Matthias Macé</span><span class="ds17">,
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