<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body text="#000000" bgcolor="#ffffff">
Hi Dario,<br>
<br>
You can find all the ensembl data on the ftp: <a
href="http://www.ensembl.org/info/data/ftp/index.html">http://www.ensembl.org/info/data/ftp/index.html</a><br>
<br>
The pig variations are stored here: <a
href="ftp://ftp.ensembl.org/pub/release-62/variation/sus_scrofa/">ftp://ftp.ensembl.org/pub/release-62/variation/sus_scrofa/</a><br>
The file that might interest you is <a class="file"
href="ftp://ftp.ensembl.org/pub/release-62/variation/sus_scrofa/Sus_scrofa.gvf.gz">Sus_scrofa.gvf.gz</a>.<br>
<br>
Cheers,<br>
<pre class="moz-signature" cols="72">Laurent</pre>
<br>
On 25/04/2011 19:23, Dario Beraldi wrote:
<blockquote
cite="mid:20110425192347.61925h7kv807ueko@www.staffmail.ed.ac.uk"
type="cite">Hello,
<br>
<br>
I'm working with the Affymetrix Porcine chip (gene expression
array for pig). I would like to download the position where each
probe maps on the pig genome.
<br>
<br>
(I can see this information is present somewhere in ENSEMBL for
example
<a class="moz-txt-link-freetext" href="http://www.ensembl.org/Sus_scrofa/Location/Genome?db=core;fdb=funcgen;ftype=ProbeFeature;g=ENSSSCG00000014369;id=Ssc.4978.1.S1_at;ptype=pset;r=2:129356198-129357848;t=ENSSSCT00000015699">http://www.ensembl.org/Sus_scrofa/Location/Genome?db=core;fdb=funcgen;ftype=ProbeFeature;g=ENSSSCG00000014369;id=Ssc.4978.1.S1_at;ptype=pset;r=2:129356198-129357848;t=ENSSSCT00000015699</a>
but I can't figure out how to extract the genome position in batch
for all the probes).
<br>
<br>
Many thanks!
<br>
<br>
Dario
<br>
<br>
</blockquote>
</body>
</html>