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    ~2kb up and down the gene start is commonly used for Human proximal
    regulatory regions.<br>
    As a broader region, you could use ~2kb around the whole gene.<br>
    <br>
    Daniel<br>
    <br>
    On 03/05/2011 13:02, Oliver, Gavin wrote:
    <blockquote
cite="mid:EBEA7CF8A45DD84797EADA31209279930388123B@NI-CR-SVC-EX1.pharms-services.com"
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                <div class="Section1">
                  <p class="MsoNormal"><font color="navy" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial; color: navy;">Thanks for
                        this!<o:p></o:p></span></font></p>
                  <p class="MsoNormal"><font color="navy" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial; color: navy;"><o:p> </o:p></span></font></p>
                  <p class="MsoNormal"><font color="navy" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial; color: navy;">Is there any
                        sort of distance that is
                        recommended/has been previously utilized for
                        such purposes?<o:p></o:p></span></font></p>
                  <p class="MsoNormal"><font color="navy" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial; color: navy;"><o:p> </o:p></span></font></p>
                  <p class="MsoNormal"><font color="navy" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial; color: navy;">Best, <o:p></o:p></span></font></p>
                  <p class="MsoNormal"><font color="navy" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial; color: navy;"><o:p> </o:p></span></font></p>
                  <p class="MsoNormal"><font color="navy" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial; color: navy;">Gavin<o:p></o:p></span></font></p>
                  <p class="MsoNormal"><font color="navy" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial; color: navy;"><o:p> </o:p></span></font></p>
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                          color: windowtext;">
                          <hr tabindex="-1" align="center" size="2"
                            width="100%">
                        </span></font></div>
                    <p class="MsoNormal"><b><font color="black"
                          face="Tahoma" size="2"><span style="font-size:
                            10pt; font-family: Tahoma; color:
                            windowtext; font-weight: bold;">From:</span></font></b><font
                        color="black" face="Tahoma" size="2"><span
                          style="font-size: 10pt; font-family: Tahoma;
                          color: windowtext;"> Daniel Sobral
                          [<a class="moz-txt-link-freetext" href="mailto:sobral@ebi.ac.uk">mailto:sobral@ebi.ac.uk</a>] <br>
                          <b><span style="font-weight: bold;">Sent:</span></b>
                          03 May 2011 12:56<br>
                          <b><span style="font-weight: bold;">To:</span></b>
                          <st1:personname w:st="on">Oliver, Gavin</st1:personname>;
                          dev ensembl<br>
                          <b><span style="font-weight: bold;">Subject:</span></b>
                          [SPAM] - Re:
                          [ensembl-dev] Quick question RE exons and
                          regulatory regions - Email found in
                          subject</span></font><font color="black"><span
                          style="color: windowtext;"><o:p></o:p></span></font></p>
                  </div>
                  <p class="MsoNormal"><font color="black" face="Times
                      New Roman" size="3"><span style="font-size: 12pt;"><o:p> </o:p></span></font></p>
                  <p class="MsoNormal"><font color="black" face="Times
                      New Roman" size="3"><span style="font-size: 12pt;">At
                        the moment, we cannot associate a regulatory
                        region
                        to a specific gene.<br>
                        What you can do is get all regulatory regions
                        around a certain distance of the
                        gene.<br>
                        <br>
                        Hope that helps,<br>
                        Daniel<br>
                        <br>
                        On 03/05/2011 12:22, <st1:personname w:st="on">Oliver,
                          Gavin</st1:personname>
                        wrote: <o:p></o:p></span></font></p>
                  <p class="MsoNormal"><font color="black" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial;">Hi all, <u1:p></u1:p></span></font><o:p></o:p></p>
                  <p class="MsoNormal"><font color="black" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial;"><u1:p> </u1:p></span></font><o:p></o:p></p>
                  <p class="MsoNormal"><font color="black" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial;">Just wondering – using the
                        relevant APIs is it
                        possible to take a list of genes, extract all
                        associated exon coordinates and
                        also the coordinates of associated regulatory
                        regions?<u1:p></u1:p></span></font><o:p></o:p></p>
                  <p class="MsoNormal"><font color="black" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial;"><u1:p> </u1:p></span></font><o:p></o:p></p>
                  <p class="MsoNormal"><font color="black" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial;">I know the exon bit is ok,
                        but it’s the
                        associated regulatory regions I’ve never looked
                        at before…<u1:p></u1:p></span></font><o:p></o:p></p>
                  <p class="MsoNormal"><font color="black" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial;"><u1:p> </u1:p></span></font><o:p></o:p></p>
                  <p class="MsoNormal"><font color="black" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial;">Cheers, <u1:p></u1:p></span></font><o:p></o:p></p>
                  <p class="MsoNormal"><font color="black" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial;"><u1:p> </u1:p></span></font><o:p></o:p></p>
                  <p class="MsoNormal"><font color="black" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial;">Gavin<u1:p></u1:p></span></font><o:p></o:p></p>
                  <p class="MsoNormal"><font color="black" face="Arial"
                      size="2"><span style="font-size: 10pt;
                        font-family: Arial;"><u1:p> </u1:p></span></font><o:p></o:p></p>
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                          face="Times New Roman" size="3"><span
                            style="font-size: 12pt; color: blue;"><!--[object_id=#almacgroup.com#]--> 
                          </span></font></b></strong><o:p></o:p></p>
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                          face="Times New Roman" size="3"><span
                            style="font-size: 12pt;" lang="EN-GB">Almac
                            Group (UK) Limited, registered no.
                            NI061368.  Almac Sciences Limited,
                            registered no. NI041550.  Almac
                            Discovery Limited, registered no. NI046249.
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                            Limited, registered no. NI045055.  Almac
                            Clinical Services Limited,
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                            Technologies Limited, registered
                            no. NI061202.  Almac Diagnostics Limited,
                            registered no. NI043067. 
                            All preceding companies are registered in <st1:country-region
                              u2:st="on"><st1:country-region w:st="on">Northern
                                Ireland</st1:country-region></st1:country-region>
                            with a
                            registered office address of Almac House, 20
                            Seagoe Industrial Estate, <st1:place
                              u2:st="on"><st1:city u2:st="on"><st1:place
                                  w:st="on"><st1:city w:st="on">Craigavon</st1:city></st1:place>,
                                <st1:postalcode u2:st="on"><st1:postalcode
                                    w:st="on">BT63 5QD</st1:postalcode></st1:postalcode>,
                                <st1:country-region u2:st="on"><st1:country-region
                                    w:st="on">UK</st1:country-region></st1:country-region></st1:city></st1:place>.
                             <u1:p></u1:p></span></font></b></strong><o:p></o:p></p>
                  <p class="MsoNormal"><strong><b><font color="black"
                          face="Times New Roman" size="3"><span
                            style="font-size: 12pt;" lang="EN-GB"><u1:p> </u1:p></span></font></b></strong><o:p></o:p></p>
                  <p class="MsoNormal"><strong><b><font color="black"
                          face="Times New Roman" size="3"><span
                            style="font-size: 12pt;" lang="EN-GB">Almac
                            Sciences (<st1:country-region w:st="on"><st1:country-region
                                u2:st="on">Scotland</st1:country-region></st1:country-region>)
                            Limited, registered in <st1:country-region
                              w:st="on"><st1:place w:st="on"><st1:country-region
                                  u2:st="on"><st1:place u2:st="on">Scotland</st1:place></st1:country-region></st1:place></st1:country-region>
                            no. SC154034. </span></font><u1:p></u1:p></b></strong><o:p></o:p></p>
                  <p class="MsoNormal"><strong><b><font color="black"
                          face="Times New Roman" size="3"><span
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                  <p class="MsoNormal"><strong><b><font color="black"
                          face="Times New Roman" size="3"><span
                            style="font-size: 12pt;" lang="EN-GB">Almac
                            Clinical Services LLC, Almac Clinical
                            Technologies LLC, Almac Diagnostics LLC,
                            Almac Pharma Services LLC and Almac
                            Sciences LLC are Delaware limited liability
                            companies and Almac Group
                            Incorporated is a Delaware Corporation. 
                            More information on the Almac
                            Group can be found on the Almac website: <a
                              href="http://www.almacgroup.com"
                              moz-do-not-send="true">www.almacgroup.com</a></span></font><u1:p></u1:p></b></strong><o:p></o:p></p>
                  <pre wrap=""><font color="black" face="Courier New" size="2"><span style="font-size: 10pt;"><o:p> </o:p></span></font></pre>
                  <pre><fieldset class="mimeAttachmentHeader"></fieldset><font color="black" face="Courier New" size="2"><span style="font-size: 10pt;"><o:p> </o:p></span></font></pre>
                  <pre><font color="black" face="Courier New" size="2"><span style="font-size: 10pt;">_______________________________________________<o:p></o:p></span></font></pre>
                  <pre><font color="black" face="Courier New" size="2"><span style="font-size: 10pt;">Dev mailing list    <a moz-do-not-send="true" href="mailto:Dev@ensembl.org">Dev@ensembl.org</a><o:p></o:p></span></font></pre>
                  <pre><font color="black" face="Courier New" size="2"><span style="font-size: 10pt;">List admin (including subscribe/unsubscribe): <a moz-do-not-send="true" href="http://lists.ensembl.org/mailman/listinfo/dev">http://lists.ensembl.org/mailman/listinfo/dev</a><o:p></o:p></span></font></pre>
                  <pre><font color="black" face="Courier New" size="2"><span style="font-size: 10pt;">Ensembl Blog: <a moz-do-not-send="true" href="http://www.ensembl.info/">http://www.ensembl.info/</a><o:p></o:p></span></font></pre>
                  <p class="MsoNormal"><font color="black" face="Times
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