This information is indeed not available in BioMart.<br><br>Cheers,<br>Bert<br><br><div class="gmail_quote">On Wed, May 11, 2011 at 3:22 PM, ian Longden <span dir="ltr"><<a href="mailto:ianl@ebi.ac.uk">ianl@ebi.ac.uk</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">This data is stored in the Karyotype table in Ensembl. Biomart is gene<br>
centric so may not have this data as the karyotype data is based on<br>
seq regions (chromosomes in this case)<br>
I am not an Biomart expert but i could not see anything obvious in martview.<br>
<font color="#888888"><br>
-Ian.<br>
</font><div><div></div><div class="h5"><br>
On Wed, May 11, 2011 at 3:13 PM, Beat Wolf <<a href="mailto:wolf@fryx.ch">wolf@fryx.ch</a>> wrote:<br>
> Hello,<br>
><br>
> i'm using ensembl in an application i'm writing. It's a java application and<br>
> for that reason i access the ensembl data trough BioMart.<br>
><br>
> Now my question. Ensembl has those chromosome ideograms that are shown on the<br>
> website. I would love to integrate such a ideogram in my application, but i<br>
> didn't find a way to access the needed data trough biomart. I'm a computer<br>
> scientist, so i might simply not know the right terminology for what i'm<br>
> searching for.<br>
><br>
> Thank you very much for your help<br>
><br>
> Beat Wolf<br>
><br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br>Bert Overduin, Ph.D.<br>Vertebrate Genomics Team<br><br>EMBL - European Bioinformatics Institute<br>Wellcome Trust Genome Campus<br>Hinxton, Cambridge CB10 1SD<br>
United Kingdom<br><br><a href="http://www.ebi.ac.uk/%7Ebert" target="_blank">http://www.ebi.ac.uk/~bert</a><div><p style="margin-bottom: 0.0001pt;"><font face="Arial"></font></p><p style="margin-bottom: 0.0001pt;"><font face="Arial">
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