<div>for some jobs, i got error info:</div>
<div> </div>
<div>-------------------- WARNING ----------------------<br>MSG: Failed to write gene no-id_wisebest 9227   11453   -1      bambus_4191<br>-------------------- EXCEPTION --------------------<br>MSG: Could not find start or end exon in transcript_id=7948</div>

<div>STACK Bio::EnsEMBL::DBSQL::TranslationAdaptor::fetch_all_alternative_by_Transcript /home/SCE/jiangwenkai/ensembl/ensembl/modules/Bio/EnsEMBL/DBSQL/TranslationAdaptor.pm:160<br>STACK Bio::EnsEMBL::Transcript::get_all_alternative_translations /home/SCE/jiangwenkai/ensembl/ensembl/modules/Bio/EnsEMBL/Transcript.pm:644<br>
STACK Bio::EnsEMBL::DBSQL::TranscriptAdaptor::store /home/SCE/jiangwenkai/ensembl/ensembl/modules/Bio/EnsEMBL/DBSQL/TranscriptAdaptor.pm:798<br>STACK Bio::EnsEMBL::DBSQL::GeneAdaptor::store /home/SCE/jiangwenkai/ensembl/ensembl/modules/Bio/EnsEMBL/DBSQL/GeneAdaptor.pm:1204<br>
STACK (eval) /home/SCE/jiangwenkai/ensembl/ensembl-analysis/modules/Bio/EnsEMBL/Analysis/RunnableDB/GeneBuilder.pm:101<br>STACK Bio::EnsEMBL::Analysis::RunnableDB::GeneBuilder::write_output /home/SCE/jiangwenkai/ensembl/ensembl-analysis/modules/Bio/EnsEMBL/Analysis/RunnableDB/GeneBuilder.pm:100<br>
STACK (eval) /home/SCE/jiangwenkai/ensembl/ensembl-pipeline/modules/Bio/EnsEMBL/Pipeline/Job.pm:641<br>STACK Bio::EnsEMBL::Pipeline::Job::run_module /home/SCE/jiangwenkai/ensembl/ensembl-pipeline/modules/Bio/EnsEMBL/Pipeline/Job.pm:639<br>
STACK (eval) /home/SCE/jiangwenkai/ensembl/ensembl-pipeline/modules/Bio/EnsEMBL/Pipeline/<a href="http://runner.pl:219">runner.pl:219</a><br>STACK main::run_jobs_with_lsfcopy /home/SCE/jiangwenkai/ensembl/ensembl-pipeline/modules/Bio/EnsEMBL/Pipeline/<a href="http://runner.pl:218">runner.pl:218</a><br>
STACK toplevel /home/SCE/jiangwenkai/ensembl/ensembl-pipeline/modules/Bio/EnsEMBL/Pipeline/<a href="http://runner.pl:128">runner.pl:128</a><br>---------------------------------------------------</div>
<div>FILE: Analysis/RunnableDB/GeneBuilder.pm LINE: 103<br>CALLED BY: EnsEMBL/Pipeline/Job.pm  LINE: 641<br>---------------------------------------------------<br>WRITING: Lost the will to live Error<br>Job 1 failed: [<br>
-------------------- EXCEPTION --------------------<br>MSG: Problems for GeneBuilder writing output for scaffold:june:bambus_4191:1:20466:1 [<br>-------------------- EXCEPTION --------------------<br>MSG: Failed to write some genes<br>
STACK Bio::EnsEMBL::Analysis::RunnableDB::GeneBuilder::write_output /home/SCE/jiangwenkai/ensembl/ensembl-analysis/modules/Bio/EnsEMBL/Analysis/RunnableDB/GeneBuilder.pm:110<br>STACK (eval) /home/SCE/jiangwenkai/ensembl/ensembl-pipeline/modules/Bio/EnsEMBL/Pipeline/Job.pm:641<br>
STACK Bio::EnsEMBL::Pipeline::Job::run_module /home/SCE/jiangwenkai/ensembl/ensembl-pipeline/modules/Bio/EnsEMBL/Pipeline/Job.pm:639<br>STACK (eval) /home/SCE/jiangwenkai/ensembl/ensembl-pipeline/modules/Bio/EnsEMBL/Pipeline/<a href="http://runner.pl:219">runner.pl:219</a><br>
STACK main::run_jobs_with_lsfcopy /home/SCE/jiangwenkai/ensembl/ensembl-pipeline/modules/Bio/EnsEMBL/Pipeline/<a href="http://runner.pl:218">runner.pl:218</a><br>STACK toplevel /home/SCE/jiangwenkai/ensembl/ensembl-pipeline/modules/Bio/EnsEMBL/Pipeline/<a href="http://runner.pl:128">runner.pl:128</a><br>
---------------------------------------------------<br>]<br>STACK Bio::EnsEMBL::Pipeline::Job::run_module /home/SCE/jiangwenkai/ensembl/ensembl-pipeline/modules/Bio/EnsEMBL/Pipeline/Job.pm:662<br>STACK (eval) /home/SCE/jiangwenkai/ensembl/ensembl-pipeline/modules/Bio/EnsEMBL/Pipeline/<a href="http://runner.pl:219">runner.pl:219</a><br>
STACK main::run_jobs_with_lsfcopy /home/SCE/jiangwenkai/ensembl/ensembl-pipeline/modules/Bio/EnsEMBL/Pipeline/<a href="http://runner.pl:218">runner.pl:218</a><br>STACK toplevel /home/SCE/jiangwenkai/ensembl/ensembl-pipeline/modules/Bio/EnsEMBL/Pipeline/<a href="http://runner.pl:128">runner.pl:128</a><br>
---------------------------------------------------<br>]Finished job 1<br></div>
<div>I use sequenced scaffold to build gene models, these scaffolds contained several gaps.</div>
<div> </div>
<div>These errors means what?  </div>
<div> </div>
<div> </div>
<div> </div>