<html><head><base href="x-msg://1098/"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Jolyon<div><br></div><div>I have actually been sitting on a method to do just this. I will get it polished and checked into the head ASAP. I will notify you when it's in.</div><div><br></div><div>Nath</div><div><br><div><div>On 14 Jul 2011, at 12:41, Jolyon Holdstock wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div lang="EN-US" link="blue" vlink="purple"><div class="Section1" style="page: Section1; "><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; ">Hi,<o:p></o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><o:p> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; ">I have used the API to query ensembl for the genes on Chromosome X.<o:p></o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><o:p> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; ">It has reported 2351 genes comprising 20535 exons.<o:p></o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><o:p> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; ">Is there a way to see which of these genes are in the pseudoautosomal repeat region?<o:p></o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><o:p> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; ">Thanks,<o:p></o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><o:p> </o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; ">Jolyon<o:p></o:p></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><o:p> </o:p></div><p class="MsoNormal" style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 12pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><span style="font-size: 9pt; font-family: Arial, sans-serif; ">Dr. Jolyon Holdstock <span class="Apple-converted-space"> </span><br>Senior Computational Biologist, <span class="Apple-converted-space"> </span><br>Oxford Gene Technology, <span class="Apple-converted-space"> </span><br>Begbroke Science Park, <span class="Apple-converted-space"> </span><br>Sandy Lane, Yarnton, <span class="Apple-converted-space"> </span><br>Oxford, OX5 1PF, UK. <span class="Apple-converted-space"> </span><br><br>T: +44 (0)1865 856 852 <span class="Apple-converted-space"> </span><br>F: +44 (0)1865 842 116 <o:p></o:p></span></p><p class="MsoNormal" style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 12pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><span style="font-size: 9pt; font-family: Arial, sans-serif; ">E: <a href="mailto:jolyon.holdstock@ogt.co.uk" style="color: blue; text-decoration: underline; "><span style="color: blue; ">jolyon.holdstock@ogt.co.uk</span></a> <span class="Apple-converted-space"> </span><br>W:<span class="Apple-converted-space"> </span><a href="blocked::http://www.ogt.co.uk/" title="blocked::http://www.ogt.co.uk/
http://www.ogt.co.uk/" style="color: blue; text-decoration: underline; "><span style="color: blue; ">www.ogt.co.uk</span></a> <o:p></o:p></span></p><p class="MsoNormal" style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 12pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><span style="font-size: 9pt; font-family: Arial, sans-serif; "><span><image001.png></span> <o:p></o:p></span></p><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><span lang="EN-GB" style="font-family: Arial, sans-serif; color: rgb(112, 109, 157); ">Looking to outsource your microarray studies? Look no further.</span><span lang="EN-GB" style="font-size: 9pt; font-family: Arial, sans-serif; color: rgb(112, 109, 157); "><br></span><span lang="EN-GB" style="font-size: 9pt; font-family: Arial, sans-serif; color: black; "><a href="http://www.ogt.co.uk/highthroughputservices.html" title="http://www.ogt.co.uk/highthroughputservices.html" style="color: blue; text-decoration: underline; "><span style="color: blue; ">Click here to tour our facilities</span></a></span><span lang="EN-GB" style="font-size: 9pt; font-family: Arial, sans-serif; color: rgb(112, 109, 157); "><o:p></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><span lang="EN-GB" style="font-size: 9pt; font-family: Arial, sans-serif; color: black; "><a href="http://www.ogt.co.uk/htsquotationrequest.asp" title="http://www.ogt.co.uk/htsquotationrequest.asp" style="color: blue; text-decoration: underline; "><span style="color: blue; ">Click here to request a quotation</span></a></span><span lang="EN-GB" style="font-size: 9pt; font-family: Arial, sans-serif; color: rgb(112, 109, 157); "><o:p></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><span lang="EN-GB" style="font-size: 9pt; font-family: Arial, sans-serif; color: rgb(112, 109, 157); "><o:p> </o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><span lang="EN-GB" style="font-size: 9pt; font-family: Arial, sans-serif; color: rgb(112, 109, 157); ">Scientific pedigree delivering high quality microarray results to you:<o:p></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 36pt; font-size: 11pt; font-family: Calibri, sans-serif; text-indent: -18pt; "><span lang="EN-GB" style="font-size: 9pt; font-family: Symbol; color: rgb(112, 109, 157); ">·</span><span lang="EN-GB" style="font-size: 7pt; font-family: 'Times New Roman', serif; color: rgb(112, 109, 157); "> <span class="Apple-converted-space"> </span></span><span lang="EN-GB" style="font-size: 9pt; font-family: Arial, sans-serif; color: rgb(112, 109, 157); ">Service capacity >1000 samples per week<o:p></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 36pt; font-size: 11pt; font-family: Calibri, sans-serif; text-indent: -18pt; "><span lang="EN-GB" style="font-size: 9pt; font-family: Symbol; color: rgb(112, 109, 157); ">·</span><span lang="EN-GB" style="font-size: 7pt; font-family: 'Times New Roman', serif; color: rgb(112, 109, 157); "> <span class="Apple-converted-space"> </span></span><span lang="EN-GB" style="font-size: 9pt; font-family: Arial, sans-serif; color: rgb(112, 109, 157); ">Rigorous<span class="Apple-converted-space"> </span></span><span lang="EN-GB" style="font-size: 9pt; font-family: Arial, sans-serif; color: black; "><a href="http://www.ogt.co.uk/hts_qc.html" title="http://www.ogt.co.uk/hts_qc.html" style="color: blue; text-decoration: underline; "><span style="color: blue; ">QC</span></a></span><span lang="EN-GB" style="font-size: 9pt; font-family: Arial, sans-serif; color: rgb(112, 109, 157); "><span class="Apple-converted-space"> </span>from sample to result<o:p></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 36pt; font-size: 11pt; font-family: Calibri, sans-serif; text-indent: -18pt; "><span lang="EN-GB" style="font-size: 9pt; font-family: Symbol; color: rgb(112, 109, 157); ">·</span><span lang="EN-GB" style="font-size: 7pt; font-family: 'Times New Roman', serif; color: rgb(112, 109, 157); "> <span class="Apple-converted-space"> </span></span><span lang="EN-GB" style="font-size: 9pt; font-family: Arial, sans-serif; color: black; "><a href="http://www.ogt.co.uk/hts_apps.html" title="http://www.ogt.co.uk/hts_apps.html" style="color: blue; text-decoration: underline; "><span style="color: blue; ">Applications</span></a></span><span lang="EN-GB" style="font-size: 9pt; font-family: Arial, sans-serif; color: rgb(112, 109, 157); "><span class="Apple-converted-space"> </span>available include aCGH, CNV, methylation studies and miRNA<o:p></o:p></span></div><p class="MsoNormal" style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 12pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><span style="font-size: 10pt; font-family: Arial, sans-serif; "><br></span><span style="font-size: 8pt; font-family: Arial, sans-serif; "><br>Oxford Gene Technology (Operations) Ltd. Registered in England No: 03845432 Begbroke Science Park Sandy Lane Yarnton Oxford OX5 1PF <o:p></o:p></span></p><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><span style="font-size: 8pt; font-family: Arial, sans-serif; ">Confidentiality Notice: The contents of this email from Oxford Gene Technology are confidential and intended solely for the person to whom it is addressed. It may contain privileged and confidential information. If you are not the intended recipient you must not read, copy, distribute, discuss or take any action in reliance on it. If you have received this email in error please advise the sender so that we can arrange for proper delivery. Then please delete the message from your inbox. Thank you.<o:p></o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><span lang="EN-GB"><o:p> </o:p></span></div><div style="margin-top: 0cm; margin-right: 0cm; margin-bottom: 0.0001pt; margin-left: 0cm; font-size: 11pt; font-family: Calibri, sans-serif; "><o:p> </o:p></div></div>This email has been scanned by Oxford Gene Technology Security Systems.<span class="Apple-converted-space"> </span>_______________________________________________<br>Dev mailing list <a href="mailto:Dev@ensembl.org" style="color: blue; text-decoration: underline; ">Dev@ensembl.org</a><br>List admin (including subscribe/unsubscribe):<span class="Apple-converted-space"> </span><a href="http://lists.ensembl.org/mailman/listinfo/dev" style="color: blue; text-decoration: underline; ">http://lists.ensembl.org/mailman/listinfo/dev</a><br>Ensembl Blog:<span class="Apple-converted-space"> </span><a href="http://www.ensembl.info/" style="color: blue; text-decoration: underline; ">http://www.ensembl.info/</a><br></div></span></blockquote></div><br><div>
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; -webkit-text-decorations-in-effect: none; text-indent: 0px; -webkit-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><span class="Apple-style-span" style="border-collapse: separate; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; -webkit-text-decorations-in-effect: none; text-indent: 0px; -webkit-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><span class="Apple-style-span" style="border-collapse: separate; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; -webkit-text-decorations-in-effect: none; text-indent: 0px; -webkit-text-size-adjust: auto; text-transform: none; orphans: 2; white-space: normal; widows: 2; word-spacing: 0px; "><div>Nathan Johnson</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Senior Scientific Programmer</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Ensembl Regulation</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">European Bioinformatics Institute</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Wellcome Trust Genome Campus</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Hinxton</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; ">Cambridge CB10 1SD</div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><br></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><a href="http://www.ensembl.info/">http://www.ensembl.info/</a></div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><a href="http://twitter.com/#!/ensembl">http://twitter.com/#!/ensembl</a></div><div><br class="khtml-block-placeholder"></div><div><br class="khtml-block-placeholder"></div><br class="Apple-interchange-newline"></span></span></span></div></span><br class="Apple-interchange-newline"></span><br class="Apple-interchange-newline">
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