<div>Hello, </div><div><br></div><div>I used this command to do the homology alignment and got some error information. I am sure there is the GenomeDBAdaptor in my computer. Could you help me to fix this problem? Appreciate it!</div>
<div><br></div><div>Best Regards,</div><div>Jianguo Lu</div><div>-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------</div>
<div>perl getHomologyAlignment.pl -dbhost <a href="http://ensembldb.ensembl.org" target="_blank">ensembldb.ensembl.org</a> -dbname ensembl_compara_51 -dbuser anonymous -dbport 5306 -sp sapiens -g ENSG00000004059</div><div>
<br></div><div>-------------------- WARNING ----------------------</div>
<div>MSG: Bio::EnsEMBL::Compara::DBSQL::GenomeDBAdaptor cannot be found.</div><div>Exception Bareword "SQL_VARCHAR" not allowed while "strict subs" in use at /home/catfish/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/DBSQL/GenomeDBAdaptor.pm line 278.</div>

<div>Bareword "SQL_VARCHAR" not allowed while "strict subs" in use at /home/catfish/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/DBSQL/GenomeDBAdaptor.pm line 279.</div><div>Bareword "SQL_INTEGER" not allowed while "strict subs" in use at /home/catfish/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/DBSQL/GenomeDBAdaptor.pm line 280.</div>

<div>Bareword "SQL_TINYINT" not allowed while "strict subs" in use at /home/catfish/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/DBSQL/GenomeDBAdaptor.pm line 281.</div><div>Bareword "SQL_VARCHAR" not allowed while "strict subs" in use at /home/catfish/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/DBSQL/GenomeDBAdaptor.pm line 282.</div>

<div>Bareword "SQL_VARCHAR" not allowed while "strict subs" in use at /home/catfish/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/DBSQL/GenomeDBAdaptor.pm line 283.</div><div>Compilation failed in require at (eval 46) line 3.</div>

<div><br></div><div><br></div><div>FILE: Bio/EnsEMBL/Registry.pm LINE: 502</div><div>CALLED BY: EnsEMBL/DBSQL/DBAdaptor.pm  LINE: 713</div><div>---------------------------------------------------</div><div><br></div><div>

-------------------- WARNING ----------------------</div><div>MSG: Could not find GenomeDB adaptor in the registry for DEFAULT compara</div><div><br></div><div>FILE: EnsEMBL/DBSQL/DBAdaptor.pm LINE: 719</div><div>CALLED BY: EnsEMBL/Compara/Member.pm  LINE: 488</div>

<div>---------------------------------------------------</div><div>Can't call method "fetch_by_dbID" on an undefined value at /home/catfish/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/Member.pm line 489.</div>