<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Johannes<div>This is a known bug (please see here: <a href="http://www.ensembl.info/contact-us/known-bugs/)">http://www.ensembl.info/contact-us/known-bugs/)</a>. This known bugs page includes a temporary workaround. Unfortunately we will not be able to make the bug fix live until our next release 65 due out in November. I have, however, fixed this on an internal server and am happy to run your query for you if you send me your list of query RefSeq IDs. </div><div>I hope that helps,</div><div>Regards</div><div>Rhoda</div><div> </div><div><br></div><div><br></div><div><br><div><div>On 6 Oct 2011, at 15:16, Johannes Meisig wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Hi,<br><br>a month I started using Ensembl/Biomart to find Ensembl Gene IDs<br>corresponding to Refseq IDs. When I tried it again yesterday it didn't<br>work anymore.<br><br>Selecting Ensembl Gene ID and Ensembl Transcript ID as attributes and<br>Refseq mRNA ID with the Mus musculus genes dataset I get the error<br>attached to this message on the website.<br><br>The error can be easily reproduced by plugging in the example ID<br>NM_01195597 into the ID list. Is this problem known? Is there anything I<br>should do differently?<br><br>Thanks,<br>Johannes<br><br>Serious Error: Error during query execution: Table<br>'ensembl_mart_64.ox_RefSeq_mRNA__dm' doesn't exist<br><br>ERROR: caught BioMart::Exception::Database: Error during query<br>execution: Table 'ensembl_mart_64.ox_RefSeq_mRNA__dm' doesn't exist<br><br>If you repeatedly get directed to this error page, there may be a<br>problem with your current session parameters. To clear your session and<br>start with a clean slate, please click the New button below.<br><br>Stacktrace:<br>Exception::Class::Base::throw<br>/ensemblweb/wwwmart/www_64/biomart-perl/lib/BioMart/Dataset/TableSet.pm:241<br>BioMart::Dataset::TableSet::_fillAttributeTableWith<br>/ensemblweb/wwwmart/www_64/biomart-perl/lib/BioMart/Dataset/TableSet.pm:124<br>BioMart::Dataset::TableSet::_getResultTable<br>/ensemblweb/wwwmart/www_64/biomart-perl/lib/BioMart/DatasetI.pm:1170<br>BioMart::DatasetI::getResultTable<br>/ensemblweb/wwwmart/www_64/biomart-perl/lib/BioMart/QueryRunner.pm:472<br>BioMart::QueryRunner::_processPath<br>/ensemblweb/wwwmart/www_64/biomart-perl/lib/BioMart/QueryRunner.pm:374<br>BioMart::QueryRunner::_getResultTable<br>/ensemblweb/wwwmart/www_64/biomart-perl/lib/BioMart/QueryRunner.pm:194<br>BioMart::QueryRunner::execute<br>/ensemblweb/wwwmart/www_64/biomart-perl/lib/BioMart/Web.pm:2464<br>(eval) /ensemblweb/wwwmart/www_64/biomart-perl/lib/BioMart/Web.pm:2216<br>BioMart::Web::handle_request<br>/ensemblweb/wwwmart/www_64/biomart-perl/cgi-bin/martview:100<br>(eval) /ensemblweb/wwwmart/www_64/biomart-perl/cgi-bin/martview:99<br>ModPerl::ROOT::ModPerl::Registry::ensemblweb_wwwmart_www_64_biomart_2dperl_cgi_2dbin_martview::handler <br>/localsw/lib/perl5/site_perl/5.8.9/x86_64-linux-thread-multi/ModPerl/RegistryCooker.pm:204<br>(eval)<br>/localsw/lib/perl5/site_perl/5.8.9/x86_64-linux-thread-multi/ModPerl/RegistryCooker.pm:204<br>ModPerl::RegistryCooker::run<br>/localsw/lib/perl5/site_perl/5.8.9/x86_64-linux-thread-multi/ModPerl/RegistryCooker.pm:170<br>ModPerl::RegistryCooker::default_handler<br>/localsw/lib/perl5/site_perl/5.8.9/x86_64-linux-thread-multi/ModPerl/Registry.pm:31<br>ModPerl::Registry::handler -e:0<br>(eval) -e:0<br><br><br>_______________________________________________<br>Dev mailing list <a href="mailto:Dev@ensembl.org">Dev@ensembl.org</a><br>List admin (including subscribe/unsubscribe): <a href="http://lists.ensembl.org/mailman/listinfo/dev">http://lists.ensembl.org/mailman/listinfo/dev</a><br>Ensembl Blog: <a href="http://www.ensembl.info/">http://www.ensembl.info/</a><br></div></blockquote></div><br><div> <span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>Rhoda Kinsella Ph.D.</div><div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 12px/normal Helvetica; ">Ensembl Production Project Leader,</div></div><div>European Bioinformatics Institute (EMBL-EBI),<br>Wellcome Trust Genome Campus, </div><div>Hinxton<br>Cambridge CB10 1SD,</div><div>UK.</div></div></span></div></span></div></span> </div><br></div></body></html>