Hello Duarte,<br><br>Ensembl uses the new version of the mitochondrion sequence, i.e. the rCRS/Mitomap sequence / NC_012920.1 (<em class="detail"></em><a href="http://www.ncbi.nlm.nih.gov/nuccore/251831106">http://www.ncbi.nlm.nih.gov/nuccore/251831106</a>), while UCSC has not updated to this version yet.<br>
<br>Please see also the note on <a href="http://genome.ucsc.edu/cgi-bin/hgGateway">http://genome.ucsc.edu/cgi-bin/hgGateway</a> under the header 'Assembly Details - Note on chrM'.<br><br>Hope this explains.<br><br>
Cheers,<br>Bert<br><br><div class="gmail_quote">On Fri, Feb 17, 2012 at 2:47 PM, Duarte Molha <span dir="ltr"><<a href="mailto:Duarte.Molha@ogt.co.uk">Duarte.Molha@ogt.co.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div link="blue" vlink="purple" lang="EN-GB"><div><p class="MsoNormal">Dear Developers<u></u><u></u></p><p class="MsoNormal"><u></u> <u></u></p><p class="MsoNormal">I am noticed that the HG19 mitochondria sequence ENSEMBL retrieves for coordinates 1-1000 is different from UCSC genome browser.<u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p><p class="MsoNormal">Could you tell me why is this the case?<u></u><u></u></p><p class="MsoNormal"><u></u> <u></u></p><p class="MsoNormal">Best regards<span class="HOEnZb"><font color="#888888"><u></u><u></u></font></span></p>
<span class="HOEnZb"><font color="#888888"><p class="MsoNormal"><u></u> <u></u></p><p class="MsoNormal"><span style="font-size:10pt;font-family:"Arial","sans-serif"">Duarte Molha<u></u><u></u></span></p>
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<br></blockquote></div><br><br clear="all"><br>-- <br>Bert Overduin, Ph.D.<br>Vertebrate Genomics Team<br><br>EMBL - European Bioinformatics Institute<br>Wellcome Trust Genome Campus<br>Hinxton, Cambridge CB10 1SD<br>United Kingdom<br>
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