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It looks like the plugin package names changed for release 13.<br>
<br>
In conf/Plugins.pm you will need to change the package names for
fungi and common. <br>
E.g.<br>
<br>
'EG::Fungi' => $SiteDefs::ENSEMBL_SERVERROOT.'/eg-plugins/fungi',<br>
'EG::Common' =>
$SiteDefs::ENSEMBL_SERVERROOT.'/eg-plugins/common',<br>
<br>
If you still have problems, please attach conf/Plugins.pm in your
next email.<br>
<br>
Cheers,<br>
Nick<br>
<br>
On 15/03/2012 10:06, ³Â¸Ú wrote:
<blockquote
cite="mid:CABjKtWZ+KPbYQ6De__GGBCZ2V=72RRcXrLg+8m=49cSjctvQVg@mail.gmail.com"
type="cite">
<div>Hi <span style="">Nick</span></div>
<div><span style=""><br>
</span></div>
<div><span>conf/Plugins.pm is fine, the last version (release-12)
worked very well.</span></div>
<div><br>
</div>
<div>The Error message is following: <br>
</div>
<div><br>
</div>
<div>##############################################################################</div>
<div># Function EnsEMBL::EnsemblGenomes::SiteDefs::update_conf not
defined in</div>
<div># /usr/local/ensembl_fungi/eg-plugins/common/conf/SiteDefs.pm</div>
<div>##############################################################################</div>
<div>##############################################################################</div>
<div># Function EnsEMBL::EnsemblFungi::SiteDefs::update_conf not
defined in</div>
<div># /usr/local/ensembl_fungi/eg-plugins/fungi/conf/SiteDefs.pm</div>
<div>##############################################################################</div>
<div>.......................</div>
<div>.......................</div>
<div>.......................</div>
<div><br>
</div>
<div>
<div> [WARN] Can't connect to DATABASE_CORE</div>
<div> [WARN] DBI
connect('database=ailuropoda_melanoleuca_core_66_1;host=172
/usr/local/ensembl_fungi/modules/EnsEMBL/Web/ConfigPacker_base.pm
line 91</div>
</div>
<div>.......................</div>
<div>........................</div>
<div><br>
</div>
<div>Genomes release-12 reading Ensembl Data, Why?</div>
<div>Please help me :(</div>
-- <br>
<div><font face="verdana, sans-serif" size="1">Gang Chen</font></div>
<div><font face="verdana, sans-serif" size="1">TILSI</font></div>
<div><font face="verdana, sans-serif" size="1"><span>Taicang
Institute For Life Science Information</span><br>
<span>Address: A2/162, Renmin South Road, Taicang, 215400,
Jiangsu Province, P.R.China</span><br>
<span>Phone:£¨+86£©512-82782588</span></font></div>
<br>
</blockquote>
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