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<DIV><FONT size=2 face=Arial><SPAN
class=105283817-22032012>Hi</SPAN></FONT></DIV>
<DIV><FONT size=2 face=Arial></FONT> </DIV>
<DIV><SPAN class=105283817-22032012><FONT size=2 face=Arial>Is there any
documentation to help me understand what is going on with the 'RNA Edits' that
are cached on construction of a SequenceAdaptor in the
PerlAPI?</FONT></SPAN></DIV>
<DIV><SPAN class=105283817-22032012><FONT size=2
face=Arial></FONT></SPAN> </DIV>
<DIV><SPAN class=105283817-22032012><FONT size=2 face=Arial>The only
doumentation that I can find about RNA Edits is in an apparently out
of date file on the ftp server... </FONT></SPAN></DIV>
<DIV><SPAN class=105283817-22032012><FONT size=2 face=Arial><A
href="ftp://ftp.ensembl.org/pub/ensembl/misc-scripts/attribute_types/attrib_type.txt">ftp://ftp.ensembl.org/pub/ensembl/misc-scripts/attribute_types/attrib_type.txt</A></FONT></SPAN></DIV>
<DIV><SPAN class=105283817-22032012><FONT size=2 face=Arial>which cryptically
says for this attribute type: <PRE># Drosophila. Sometimes sequences have been manually altered to remove one base, and this alters the whole translation
145 _rna_edit rna_edit RNA edit
</FONT></SPAN><SPAN class=105283817-22032012><FONT size=2 face=Arial></FONT></SPAN></PRE><PRE><SPAN class=105283817-22032012><FONT size=2 face=Arial>Is there better documentation on the various attribute types somewhere?</FONT></SPAN></PRE><PRE><SPAN class=105283817-22032012><FONT size=2 face=Arial>Also</FONT></SPAN></PRE><PRE><SPAN class=105283817-22032012><FONT size=2 face=Arial>How are RNA Edits related to LRGs? ( are they LRGs? in humans they are on the same coordinate system...)</FONT></SPAN></PRE></DIV>
<DIV><SPAN class=105283817-22032012><FONT size=2 face=Arial>Under what
circumstances are sequences retrieved by the SequenceAdaptor 'RNA Editted'
according to the cached information?</FONT></SPAN></DIV>
<DIV><SPAN class=105283817-22032012><FONT size=2
face=Arial></FONT></SPAN> </DIV>
<DIV><SPAN class=105283817-22032012><FONT size=2 face=Arial>I am guessing that
the RNA Edits are just an edge-case that have been levered in to the schema, I
only became aware of them when I started looking into using
LRGs.</FONT></SPAN></DIV>
<DIV><SPAN class=105283817-22032012><FONT size=2
face=Arial></FONT></SPAN> </DIV>
<DIV><SPAN class=105283817-22032012><FONT size=2
face=Arial>Thanks</FONT></SPAN></DIV>
<DIV><SPAN class=105283817-22032012><FONT size=2
face=Arial></FONT></SPAN> </DIV>
<DIV><SPAN class=105283817-22032012><FONT size=2
face=Arial>trevor</FONT></SPAN></DIV>
<DIV><SPAN class=105283817-22032012><FONT size=2
face=Arial></FONT></SPAN> </DIV>
<DIV><SPAN class=105283817-22032012></SPAN><SPAN class=105283817-22032012><FONT
size=2 face=Arial></FONT></SPAN> </DIV>
<DIV align=left>
<P align=left><STRONG><B><FONT color=navy face=Arial><SPAN
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