<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
That's really helpful Javier, thank you.<br>
<br>
Stuart<br>
<br>
On 22/06/12 10:00, Javier Herrero wrote:
<blockquote
cite="mid:5add860a-4318-4708-aebe-7aa745ba98bd@email.android.com"
type="cite">
<p>Hi Stuart</p>
<p>Bert is right, the protein sequences are not stored in the core
database. However you can find a copy of all proteins in Ensembl
in the compara database. We need them in the compara database in
order to speed up the retrieval of protein sequences from all
species at once.</p>
<p>Have a look at the member and sequence tables.</p>
<p>I hope this helps</p>
<p>Javier</p>
<p>Sent from my Kindle Fire</p>
<br>
<br>
<div
style="font-size:10.0pt;font-family:"Tahoma","sans-serif";padding:3.0pt
0in 0in 0in">
<hr style="border:none;border-top:solid #B5C4DF 1.0pt">
<b>From:</b> Bert Overduin <a class="moz-txt-link-rfc2396E" href="mailto:bert@ebi.ac.uk"><bert@ebi.ac.uk></a><br>
<b>Sent:</b> Fri Jun 22 10:20:30 GMT+02:00 2012<br>
<b>To:</b> Ensembl developers list <a class="moz-txt-link-rfc2396E" href="mailto:dev@ensembl.org"><dev@ensembl.org></a><br>
<b>Subject:</b> Re: [ensembl-dev] Protein Sequence<br>
</div>
<br>
<pre style="white-space: pre-wrap; word-wrap:break-word; font-family: sans-serif">Hi Stuart,
No, protein sequences are generated on the fly.
Cheers,
Bert
On Fri, Jun 22, 2012 at 8:54 AM, Stuart Meacham <a class="moz-txt-link-rfc2396E" href="mailto:sm12@sanger.ac.uk"><sm12@sanger.ac.uk></a> wrote:
> Hello,
>
> Is the Protein Sequence retreived by, for example,
> $transcript->translate()->seq() held in a particular table in the DB? I had
> a root around Core and couldn't find anything obvious.
>
> Thanks
>
> Stuart
>
><hr>
> Dev mailing list <a class="moz-txt-link-abbreviated" href="mailto:Dev@ensembl.org">Dev@ensembl.org</a>
> List admin (including subscribe/unsubscribe):
> <a moz-do-not-send="true" href="http://lists.ensembl.org/mailman/listinfo/dev">http://lists.ensembl.org/mailman/listinfo/dev</a>
> Ensembl Blog: <a moz-do-not-send="true" href="http://www.ensembl.info">http://www.ensembl.info</a>/
--
Bert Overduin, Ph.D.
Vertebrate Genomics Team
EMBL - European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton, Cambridge CB10 1SD
United Kingdom
<a moz-do-not-send="true" href="http://www.ebi.ac.uk/%7Ebert">http://www.ebi.ac.uk/~bert</a>
Ensembl browser: <a moz-do-not-send="true" href="http://www.ensembl.org">http://www.ensembl.org</a>
Mailing lists: <a moz-do-not-send="true" href="http://www.ensembl.org/info/about/contact/mailing.html">http://www.ensembl.org/info/about/contact/mailing.html</a>
Blog: <a moz-do-not-send="true" href="http://www.ensembl.info">http://www.ensembl.info</a>
YouTube: <a moz-do-not-send="true" href="http://www.youtube.com/user/EnsemblHelpdesk">http://www.youtube.com/user/EnsemblHelpdesk</a>
Facebook: <a moz-do-not-send="true" href="http://www.facebook.com/Ensembl.org">http://www.facebook.com/Ensembl.org</a>
Twitter: <a moz-do-not-send="true" href="http://twitter.com/Ensembl">http://twitter.com/Ensembl</a>
<hr>
Dev mailing list <a class="moz-txt-link-abbreviated" href="mailto:Dev@ensembl.org">Dev@ensembl.org</a>
List admin (including subscribe/unsubscribe): <a moz-do-not-send="true" href="http://lists.ensembl.org/mailman/listinfo/dev">http://lists.ensembl.org/mailman/listinfo/dev</a>
Ensembl Blog: <a moz-do-not-send="true" href="http://www.ensembl.info">http://www.ensembl.info</a>/
</pre>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
<pre wrap="">_______________________________________________
Dev mailing list <a class="moz-txt-link-abbreviated" href="mailto:Dev@ensembl.org">Dev@ensembl.org</a>
List admin (including subscribe/unsubscribe): <a class="moz-txt-link-freetext" href="http://lists.ensembl.org/mailman/listinfo/dev">http://lists.ensembl.org/mailman/listinfo/dev</a>
Ensembl Blog: <a class="moz-txt-link-freetext" href="http://www.ensembl.info/">http://www.ensembl.info/</a>
</pre>
</blockquote>
<br>
</body>
</html>