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<div>If I use the attached config file with an installation that has the specified cache file, I get a performance of 1 variant / second on a specific vcf file. If I run the exact same options from the command line, I get 150+ variants / second.</div>
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<div>Why does the config file give such horrible performance?</div>
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<div>-- </div>
<div>Gregory Dougherty</div>
<div><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; ">Sr. Analyst/Programmer | Information Technology</span><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; "><br>
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</span><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; ">(507) 284-8493 |
<a href="mailto:dougherty.gregory@mayo.edu">dougherty.gregory@mayo.edu</a></span><span class="Apple-style-span" style="font-family: Arial; font-size: 13px; "><font color="#0000FF"><br>
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