<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">In Variant Effect Predictor 2.7 I get the following error, which appears to cause the program to stop when forking is on:<div><br></div><div><div>ERROR: Forked process failed</div><div>Use of uninitialized value in string eq at /share/apps/myourshaw/ensembl/ensembl-variation/modules/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm line 923, <GEN1> line 5065.</div></div><div><br></div><div>Without forking, the program doesn’t stop, but I still get the error, along with other related ones.</div><div><br></div><div>The line that first complains is:</div><div><div> if($hgvs_notation->{type} eq "fs"){</div></div><div>and $hgvs_notation->{type} does not exist.</div><div><br></div><div>The offending VCF file is attached.</div><div><br></div><div></div></body></html>