<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hello Ensembl, <br><br>I'd like to find out more on how Ensembl calls SNP's. I've got FASTQ files which I would like to align against the human genome to call SNPs, mainly as a "proof of concept". <br><br>I read through "Ensembl variation resources" (<a href="http://www.biomedcentral.com/1471-2164/11/293">http://www.biomedcentral.com/1471-2164/11/293</a>) and also checked <br>out the ensembl-variation/documentation/README.snp.calling.txt in CVS.<br><br>Is this pipeline still in use ? And can you point me to other resources on the Ensembl SNP pipeline ? <br><br>Thanks, <br><br> Jan Vogel</body></html>