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</o:shapelayout></xml><![endif]--></head><body lang=EN-GB link=blue vlink=purple><div class=WordSection1><p class=MsoNormal>Hi<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>the EnsemblGenomes/bacteria website lists 6013 species on <a href="http://bacteria.ensembl.org/info/about/species.html">http://bacteria.ensembl.org/info/about/species.html</a><o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>but on examining the public mysql databases at mysql.ebi.ac.uk:4157<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>as far as I can tell the 22 databases [ bacteria_1( to 24) _collection_core_17_70_1 ] have details on only 5348 separate species<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>there would appear to be at least two databases missing <o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>bacteria_3 _collection_core_17_70_1<o:p></o:p></p><p class=MsoNormal>bacteria_20 _collection_core_17_70_1<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>- or maybe I am failing to understand the collections properly<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>for example ‘Acidilobus saccharovorans 345-15’ Is listed on the website – but I am having difficulty finding it in the database<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>cheers <o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal>trevor<o:p></o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><b><span style='font-size:12.0pt;font-family:"Arial","sans-serif";color:navy;mso-fareast-language:EN-GB'>Trevor Paterson PhD<br></span></b><span style='font-size:12.0pt;font-family:"Arial","sans-serif";color:navy;mso-fareast-language:EN-GB'><a href="mailto:trevor.paterson@roslin.ed.ac.uk"><span style='color:blue'>trevor.paterson@roslin.ed.ac.uk</span></a></span><span style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-fareast-language:EN-GB'><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><span style='font-size:12.0pt;font-family:"Arial","sans-serif";color:navy;mso-fareast-language:EN-GB'>Bioinformatics <br>The Roslin Institute<br>Royal (Dick) School of Veterinary Studies<br>University of Edinburgh<br>Easter Bush<br>Midlothian<br>EH25 9RG<br>Scotland UK<br><br>phone +44 (0)131 651 9157<br><br><a href="http://bioinformatics.roslin.ed.ac.uk/"><span style='color:blue'>http://bioinformatics.roslin.ed.ac.uk/</span></a></span><span style='font-size:12.0pt;font-family:"Times New Roman","serif";color:black;mso-fareast-language:EN-GB'><br></span><span style='font-size:10.0pt;font-family:"Times New Roman","serif";color:navy;mso-fareast-language:EN-GB'><br></span><span style='font-size:12.0pt;font-family:"Arial","sans-serif";color:green;mso-fareast-language:EN-GB'>Please consider the environment before printing this e-mail</span><span style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-fareast-language:EN-GB'><o:p></o:p></span></p><p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><i><span style='font-size:10.0pt;font-family:"Times New Roman","serif";color:navy;mso-fareast-language:EN-GB'>The University of Edinburgh is a charitable body, registered in Scotland with registration number SC005336</span></i><span style='font-size:10.0pt;font-family:"Arial","sans-serif";color:navy;mso-fareast-language:EN-GB'><br><b>Disclaimer:This e-mail and any attachments are confidential and intended solely for the use of the recipient(s) to whom they are addressed. If you have received it in error, please destroy all copies and inform the sender.</b></span><span style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-fareast-language:EN-GB'> <o:p></o:p></span></p><p class=MsoNormal><o:p> </o:p></p></div></body></html>