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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Dear ENSEMBL developers,
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<div>I have modified the registry in a way it was suggested as listed below:</div>
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<div>use strict;</div>
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<div>use Bio::EnsEMBL::Utils::ConfigRegistry;</div>
<div>use Bio::EnsEMBL::DBSQL::DBAdaptor;</div>
<div>use Bio::EnsEMBL::Variation::DBSQL::DBAdaptor;</div>
<div>use Bio::EnsEMBL::Compara::DBSQL::DBAdaptor;</div>
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<div>new Bio::EnsEMBL::DBSQL::DBAdaptor(</div>
<div> -species => 'Homo_sapiens',</div>
<div> -user => 'atchourb',</div>
<div> -pass => 'abcd1234',</div>
<div> -host => 'localhost',</div>
<div> -port => '3306',</div>
<div> -dbname => 'homo_sapiens_core_70_37'</div>
<div>);</div>
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<div>new Bio::EnsEMBL::Variation::DBSQL::DBAdaptor(</div>
<div> -species => 'Homo_sapiens',</div>
<div> -user => 'atchourb',</div>
<div> -pass => 'abcd1234',</div>
<div> -host => 'localhost',</div>
<div> -port => '3306',</div>
<div> -dbname => 'VCFdump'</div>
<div>);</div>
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<div>my @aliases = ( 'H_Sapiens', 'human' );</div>
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<div>Bio::EnsEMBL::Utils::ConfigRegistry->add_alias(</div>
<div> -species => 'Homo sapiens',</div>
<div> -alias => \@aliases</div>
<div>);</div>
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<div>1;</div>
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<div>Now I am getting the following error:</div>
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<div>Can't call method "dbc" without a package or object reference at /data/Alex/EnsemblAPI/ensembl-variation/scripts/import/import_vcf.pl line 1268.</div>
<div>and the application lists all the command line parameters. What do I need to change further for this simple case to work, I want to populate the database <font size="2">VCFdump with the variants that we have here, and </font>all<font size="2"> the database
connectivity to the best of my knowledge should work without problems, I have been able to connect to the database with JDBC connection. Is there simple way to debug this situation to see what is missing in "dbc" object?</font></div>
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<div><font size="2">Thanks for all the suggestions,</font></div>
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<div><font size="2">Alexander</font></div>
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