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HI<br>
<br>
Have noticed that there is no human gene identifiers in the
'hsapiens_gene_ensembl__homolog_mmus__dm' file in e70. It used to be
there in earlier versions (eg: e67).<br>
<br>
<a class="moz-txt-link-freetext" href="ftp://ftp.ensembl.org/pub/release-67/mysql/ensembl_mart_67/hsapiens_gene_ensembl__homolog_mmus__dm.txt.gz">ftp://ftp.ensembl.org/pub/release-67/mysql/ensembl_mart_67/hsapiens_gene_ensembl__homolog_mmus__dm.txt.gz</a>
=> Had 16 columns<br>
<a class="moz-txt-link-freetext" href="ftp://ftp.ensembl.org/pub/release-70/mysql/ensembl_mart_70/hsapiens_gene_ensembl__homolog_mmus__dm.txt.gz">ftp://ftp.ensembl.org/pub/release-70/mysql/ensembl_mart_70/hsapiens_gene_ensembl__homolog_mmus__dm.txt.gz</a>
=> Has 13 columns<br>
<br>
<br>
Looking for gene PTPN22 in e67<br>
<br>
<b>grep 'ENSG00000134242'
hsapiens_gene_ensembl__homolog_mmus__dm.txt.e67</b><br>
0.18300 3 297698 Eutheria 103716170 103663718
ortholog_one2one <b>ENSG00000134242</b> \N 0.49670
71 \N <b>
ENSMUSG00000027843</b> ENSMUSP00000029433 ENSP00000352833
71<br>
<br>
<br>
<b>grep 'ENSG00000134242'
hsapiens_gene_ensembl__homolog_mmus__dm.txt.e70</b><br>
Returns nothing, but grep on it's mouse ortholog
'ENSMUSG00000027843' gives result.<br>
<b>grep 'ENSMUSG00000027843'
hsapiens_gene_ensembl__homolog_mmus__dm.e70</b><br>
0.18290 3 477787 Eutheria 103859795 103912247
ortholog_one2one 0.49100 71 <b>ENSMUSG00000027843</b>
ENSMUSP00000029433 ENSP00000352833 71<br>
<br>
Wondering why the human gene identifier column is not available
anymore. Could you please point me to the changelogs in Ensembl
where I can get more info about this change.<br>
<br>
Thanks<br>
Prem<br>
<br>
<br>
<br>
<font color="#666666">==<br>
</font><font color="#c0c0c0"><font color="#666666"><a class="moz-txt-link-abbreviated" href="mailto:premanand.achuthan@cimr.cam.ac.uk">premanand.achuthan@cimr.cam.ac.uk</a><br>
JDRF/WT Diabetes and Inflammation Laboratory (DIL)
<br>
Cambridge Institute for Medical Research (CIMR)
<br>
Wellcome Trust/MRC Building
<br>
Addenbrooke's Hospital Hills Road Cambridge CB2 0XY</font><br>
</font><br>
<br>
<br>
<br>
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