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Or indeed fetch_by_translation_stable_id, without the typo.<br>
<br>
<div class="moz-cite-prefix">On 15/04/2013 10:37, Emily Pritchard
wrote:<br>
</div>
<blockquote cite="mid:516BCA4F.6000100@ebi.ac.uk" type="cite">
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Hi Jens<br>
<br>
It's returning undef because the transcript adaptor expects a
transcript ID. To fetch by a protein ID use the method
fetch_by_translation_table_id:<br>
<a moz-do-not-send="true" class="moz-txt-link-freetext"
href="http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1DBSQL_1_1TranscriptAdaptor.html#a973cb5603702027d5fab2f639fe26cd0">http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1DBSQL_1_1TranscriptAdaptor.html#a973cb5603702027d5fab2f639fe26cd0</a><br>
<br>
All the best<br>
<br>
Emily<br>
<br>
<div class="moz-cite-prefix">On 15/04/2013 10:32, Jens Christian
Nielsen wrote:<br>
</div>
<blockquote
cite="mid:CAEoXKwHDUYVGh+Gfh7by_-nZjycDRtXu0F7G76keOugNEFECrA@mail.gmail.com"
type="cite">
<div dir="ltr">
<div>Hello Ensemblers,</div>
<div><br>
</div>
<div>I got a list of protein stable id's like</div>
<div>ENSP00000291232</div>
<div>ENSP00000291232</div>
<div>ENSP00000382378</div>
<div>...</div>
<div><br>
</div>
<div> , and i want to retrieve the corresponding transcripts.
I have tried using:</div>
<div><br>
</div>
<div>$transcript =
$transcript_adaptor->fetch_by_stable_id($stable_id);</div>
<div><br>
</div>
<div>but it returns undefined for all the stable id's. How can
I fetch the transcripts?</div>
<div><br>
</div>
<div>Thank you,</div>
<div><br>
</div>
<div>Jens</div>
</div>
<br>
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<br>
<pre class="moz-signature" cols="72">--
Dr Emily Pritchard
Ensembl Outreach Officer
EMBL - European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton
Cambridge
CB10 1SD
UK </pre>
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</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Dr Emily Pritchard
Ensembl Outreach Officer
EMBL - European Bioinformatics Institute
Wellcome Trust Genome Campus
Hinxton
Cambridge
CB10 1SD
UK </pre>
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