<div dir="ltr">This warning is expected; I changed the versioning system for VEP this release and the plugin system hasn't caught up yet.<div><br></div><div style>Will</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">
On 17 April 2013 15:55, Guillermo Marco Puche <span dir="ltr"><<a href="mailto:guillermo.marco@sistemasgenomicos.com" target="_blank">guillermo.marco@sistemasgenomicos.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000066"><div class="im">
<div>On 04/17/13 14:52, Will McLaren wrote:<br>
</div>
<blockquote type="cite">
<pre>Hi Guillermo,
I'd guess you haven't got your configuration set up properly.
If you have your plugins in the default directory (which it looks like
you do), you need to edit the file:
$HOME/.vep/Plugins/config/Condel/config/condel_SP.conf
so that the condel.dir parameter points to the Condel config
directory, I'm guessing in your case something like:
condel.dir='/home/likewise-open/SGNET/gmarco/.vep/Plugins/config/Condel/'</pre>
</blockquote></div>
I had added last config folder to absolute path in config.<br>
Now it seems VEP is running even if i'm still getting this message:<br>
<br>
<pre>2013-04-17 16:17:08 - Read existing cache info</pre>
<pre>2013-04-17 16:17:08 - Warning: plugin Condel,/home/likewise-open/SGNET/gmarco/.vep/Plugins/config/Condel/config,b version (2.4) does not match the current VEP version (71)</pre>
<pre>2013-04-17 16:17:08 - You may experience unexpected behaviour with this plugin</pre>
<pre>2013-04-17 16:17:08 - Loaded plugin: Condel</pre>
<pre>2013-04-17 16:17:10 - INFO: Database will be accessed when using --hgvs</pre>
<pre>2013-04-17 16:17:10 - Starting...
</pre>
But Condel value is being calculated :)<div><div class="h5"><br>
<br>
Thank you.<br>
<br>
Best regards,<br>
Guillermo.<br>
<blockquote type="cite">
<pre>
Regards
Will
On 17 April 2013 11:30, Guillermo Marco Puche
<a href="mailto:guillermo.marco@sistemasgenomicos.com" target="_blank"><guillermo.marco@sistemasgenomicos.com></a> wrote:
</pre>
<blockquote type="cite">
<pre>Hello,
I'm trying to use the latest Condel Plugin obtained from GIT repository. I'm
struggling with the following error message.
2013-04-17 12:24:19 - Read existing cache inforeadline() on closed
filehandle SIFT at /home/likewise-open/SGNET/gmarco/.vep/Plugins/Condel.pm
line 136.
readline() on closed filehandle POLYPHEN at
/home/likewise-open/SGNET/gmarco/.vep/Plugins/Condel.pm line 147.
2013-04-17 12:24:20 - Warning: plugin
Condel,/home/likewise-open/SGNET/gmarco/.vep/Plugins/config/Condel/config,b
version (2.4) does not match the current VEP version (71)
Thank you.
Best regards,
Guillermo.
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<br>
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