<div dir="ltr"><div>Yes, perfect, thanks!<br></div>sarah<br></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Thu, Apr 18, 2013 at 6:21 PM, Javier Herrero <span dir="ltr"><<a href="mailto:jherrero@ebi.ac.uk" target="_blank">jherrero@ebi.ac.uk</a>></span> wrote:<br>
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Hi Michael, Sarah<br>
<br>
That is right, C. elegans and S. cereviciae's genomes have no
assembly gaps.<br>
<br>
I guess this answers your query, Sarah.<br>
<br>
Kind regards<span class="HOEnZb"><font color="#888888"><br>
<br>
Javier</font></span><div><div class="h5"><br>
<br>
<div>On 18/04/13 14:58, Michael Paulini
wrote:<br>
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<blockquote type="cite">
<div>Hi Sarah,<br>
<br>
you will be happy to know that for Caenorhabditis elegans we
(WormBase) removed the last 4 Ns in 2004 and the last real gaps
were filled over a decade ago.<br>
But I cannot speak for other "finished" genome assemblies.<br>
<br>
best regards,<br>
<br>
Michael<br>
<br>
On 18/04/13 14:17, Sarah Djebali wrote:<br>
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<blockquote type="cite">
<pre>Dear developpers,
I am doing a transcriptome analysis of different species over the time (ie
for different ensembl versions), and I need to know where the gaps are
located for different assemblies of different species, is there an easy way
to do this automatically?
I would need in particular the gaps for:
- Caenorhabditis_elegans WBcel215
- Caenorhabditis_elegans WS220
- Saccharomyces_cerevisiae EF2
- Saccharomyces_cerevisiae EF3
- Saccharomyces_cerevisiae EF4
thanks!
Sarah
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<br>
</div></div><div class="im"><pre cols="72">--
Javier Herrero, PhD
Ensembl Coordinator and Ensembl Compara Project Leader
European Bioinformatics Institute (EMBL-EBI)
Wellcome Trust Genome Campus, Hinxton
Cambridge - CB10 1SD - UK</pre>
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<br></blockquote></div><br><br clear="all"><br>-- <br>***********************************************************<br>Sarah Djebali - Post-doctoral researcher<br>Center for Genomic Regulation (CRG)<br>Doctor Aiguader, 88 - 08003 BARCELONA<br>
Tel. +34 933 160 167 - Fax +34 933 160 099<br>sarah.djebali at crg dot es<br><a href="http://big.crg.cat/bioinformatics_and_genomics" target="_blank">http://big.crg.cat/bioinformatics_and_genomics</a>
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