<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Thank to both of you for your quick answer !!! . <div><br></div><div>I will let you know . I'll start by Arabidopsis <=> mouse orthologous<div><br></div><div>Regards</div><div><br><div><div>On 13 May 2013, at 13:22, "Arnaud Kerhornou" <<a href="mailto:arnaud@ebi.ac.uk">arnaud@ebi.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite">Hi Eduardo,<br><br>Yes, both Arabidopsis and human are in the pan homology database, but also we also holds human, along with a few other metazoan model organisms in the plants compara database,<br><br>e.g. a gene tree with both human and arabidopsis<br><a href="http://plants.ensembl.org/Arabidopsis_thaliana/Gene/Compara_Ortholog?g=AT1G01140;r=1:64166-67625">http://plants.ensembl.org/Arabidopsis_thaliana/Gene/Compara_Ortholog?g=AT1G01140;r=1:64166-67625</a><br><br>Arnaud<br><br>On 13/05/2013 12:14, Anne Parker wrote:<br><blockquote type="cite">Ensembl Plants has a "pan-taxonomic" compara database with selected vertebrate species such as human and mouse. See the full list here:<br><br>http://plants.ensembl.org/Arabidopsis_thaliana/Gene/PanComparaSpecies?g=AT3G52430;r=3:19431371-19434403;t=AT3G52430.1<br><br>Cheers<br><br>Anne<br><br><br>On 13 May 2013, at 12:08, Eduardo Andrés León <eandres@cnio.es> wrote:<br><br><blockquote type="cite">Dear all,<br>I was wondering if it's possible to look for orthologous genes between very far species like arabidopsis and some mammals.<br><br>I can't find Arabidopsis in ensembl compara and I cant find mammals in the ensembl plants database.<br><br>So any idea ?<br><br> Thanks in advance.<br><br><br>===================================================<br>Eduardo Andrés León<br>Tlfn: (+34) 91 732 80 00 / 91 224 69 00 (ext 5054/3063)<br>e-mail: eandres@cnio.es Fax: (+34) 91 224 69 76<br>Unidad de Bioinformática Bioinformatics Unit<br>Centro Nacional de Investigaciones Oncológicas<br>C.P.: 28029 Zip Code: 28029<br>C/. Melchor Fernández Almagro, 3 Madrid (Spain)<br>http://bioinfo.cnio.es<span class="Apple-tab-span" style="white-space:pre"> </span>http://bioinfo.cnio.es/people/eandres<br>===================================================<br><br>_______________________________________________<br>Dev mailing list Dev@ensembl.org<br>Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev<br>Ensembl Blog: http://www.ensembl.info/<br></blockquote>Anne Parker<br>Ensembl Web Production Manager<br>http://www.ensembl.org<br><br><br><br><br>_______________________________________________<br>Dev mailing list Dev@ensembl.org<br>Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev<br>Ensembl Blog: http://www.ensembl.info/<br><br><br></blockquote><br><br>_______________________________________________<br>Dev mailing list Dev@ensembl.org<br>Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev<br>Ensembl Blog: http://www.ensembl.info/<br></blockquote></div><br><div apple-content-edited="true">
<div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: medium; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div style="font-size: 12px; ">===================================================<br>Eduardo Andrés León<br>Tlfn: (+34) 91 732 80 00 / 91 224 69 00 (ext 5054/3063)<br>e-mail: <a href="mailto:eandres@cnio.es">eandres@cnio.es</a> Fax: (+34) 91 224 69 76<br>Unidad de Bioinformática Bioinformatics Unit<br>Centro Nacional de Investigaciones Oncológicas<br>C.P.: 28029 Zip Code: 28029<br>C/. Melchor Fernández Almagro, 3 Madrid (Spain)</div><div style="font-size: 12px; "><a href="http://bioinfo.cnio.es">http://bioinfo.cnio.es</a><span class="Apple-tab-span" style="white-space: pre; "> </span>http://bioinfo.cnio.es/people/eandres<br>===================================================</div></div>
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