<div dir="ltr">Hi Guillermo,<div style><br>Have you tried the --domains flag in the VEP?</div><div style><br></div><div style>Perhaps this is not enough information for you but it does provide the display label of overlapping protein domains.</div>
<div style><br></div><div style>The protein object is referred to as a translation object in the Ensembl API; you can retrieve it from the transcript via $transcript->translation.</div><div style><br></div><div style>See <a href="http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1Translation.html">http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1Translation.html</a></div>
<div style><br></div><div style>Regards</div><div style><br></div><div style>Will</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On 13 May 2013 12:15, Guillermo Marco Puche <span dir="ltr"><<a href="mailto:guillermo.marco@sistemasgenomicos.com" target="_blank">guillermo.marco@sistemasgenomicos.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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<div>Hello,<br>
<br>
So it seems nobody has done this yet. I'll do it then :)<br>
<br>
Does VEP support any kind of """Proteinfeature"""? Checking the
other scripts it seems I must be using Transcript feature_type. <br>
<br>
Correct me if I'm wrong please, I'm a bit confused since
interpro_ac is part from Core ProteinFeature.
(EnsEMBL::ProteinFeature::interpro_ac)<br>
<br>
Best regards,<br>
Guillermo.<div><div class="h5"><br>
<br>
On 05/09/2013 04:16 PM, Guillermo Marco Puche wrote:<br>
</div></div></div>
<blockquote type="cite"><div><div class="h5">
Hello,<br>
<br>
Does anyone coded a plugin to obtain InterPro ID and description
for VEP?<br>
I've looked in VEP repo without luck.<br>
<br>
I want to know before start coding.<br>
<br>
Thank you !<br>
<br>
Best regards,<br>
Guillermo.<br>
<br>
<fieldset></fieldset>
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<p> <span style="font-size:12px">Guillermo Marco Puche<br>
<br>
Bioinformatician, Computer Science Engineer.<br>
Sistemas Genómicos S.L.<br>
Phone: <a href="tel:%2B34%20902%20364%20669" value="+34902364669" target="_blank">+34 902 364 669</a><br>
Fax: <a href="tel:%2B34%20902%20364%20670" value="+34902364670" target="_blank">+34 902 364 670</a><br>
<a href="http://www.sistemasgenomicos.com" target="_blank">www.sistemasgenomicos.com</a></span><span style="font-size:11px"></span></p>
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