<div dir="ltr">Hi Guillermo,<div style><br>Have you tried the --domains flag in the VEP?</div><div style><br></div><div style>Perhaps this is not enough information for you but it does provide the display label of overlapping protein domains.</div>
<div style><br></div><div style>The protein object is referred to as a translation object in the Ensembl API; you can retrieve it from the transcript via $transcript->translation.</div><div style><br></div><div style>See <a href="http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1Translation.html">http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1Translation.html</a></div>
<div style><br></div><div style>Regards</div><div style><br></div><div style>Will</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On 13 May 2013 12:15, Guillermo Marco Puche <span dir="ltr"><<a href="mailto:guillermo.marco@sistemasgenomicos.com" target="_blank">guillermo.marco@sistemasgenomicos.com</a>></span> wrote:<br>
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    <div>Hello,<br>
      <br>
      So it seems nobody has done this yet. I'll do it then :)<br>
      <br>
      Does VEP support any kind of """Proteinfeature"""? Checking the
      other scripts it seems I must be using Transcript feature_type. <br>
      <br>
      
      Correct me if I'm wrong please, I'm a bit confused since
      interpro_ac is part from Core ProteinFeature. 
      (EnsEMBL::ProteinFeature::interpro_ac)<br>
      <br>
      Best regards,<br>
      Guillermo.<div><div class="h5"><br>
      <br>
      On 05/09/2013 04:16 PM, Guillermo Marco Puche wrote:<br>
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      Hello,<br>
      <br>
      Does anyone coded a plugin to obtain InterPro ID and description
      for VEP?<br>
      I've looked in VEP repo without luck.<br>
      <br>
      I want to know before start coding.<br>
      <br>
      Thank you !<br>
      <br>
      Best regards,<br>
      Guillermo.<br>
      <br>
      <fieldset></fieldset>
      <br>
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              <p> <span style="font-size:12px">Guillermo Marco Puche<br>
                  <br>
                  Bioinformatician, Computer Science Engineer.<br>
                  Sistemas Genómicos S.L.<br>
                  Phone: <a href="tel:%2B34%20902%20364%20669" value="+34902364669" target="_blank">+34 902 364 669</a><br>
                  Fax: <a href="tel:%2B34%20902%20364%20670" value="+34902364670" target="_blank">+34 902 364 670</a><br>
                  <a href="http://www.sistemasgenomicos.com" target="_blank">www.sistemasgenomicos.com</a></span><span style="font-size:11px"></span></p>
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              <p> <span style="font-size:11px"><a href="https://www.sistemasgenomicos.com/web_sg/web/areas-bioinformatica.php" target="_blank"> <img alt="" src="cid:part2.03060109.06020205@sistemasgenomicos.com" style="min-height:100px;width:250px"> </a></span></p>

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