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<div class="moz-cite-prefix">You're right.<br>
I'm sorry.<br>
<br>
On 05/23/2013 09:50 AM, Duarte Molha wrote:<br>
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<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Sorry
to be frank Guillermo, but don’t you think that is something
you can quick find out without asking the dev forum? <o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Especially
since there is a field on the output called
“Existing_variation”!<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">If
the variation has multiple names each ID is comma separated.<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Best
regards<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><br>
Duarte<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span
style="font-size:10.0pt;font-family:"Tahoma","sans-serif";color:windowtext"
lang="EN-US">From:</span></b><span
style="font-size:10.0pt;font-family:"Tahoma","sans-serif";color:windowtext"
lang="EN-US"> <a class="moz-txt-link-abbreviated" href="mailto:dev-bounces@ensembl.org">dev-bounces@ensembl.org</a>
[<a class="moz-txt-link-freetext" href="mailto:dev-bounces@ensembl.org">mailto:dev-bounces@ensembl.org</a>] <b>On Behalf Of </b>Guillermo
Marco Puche<br>
<b>Sent:</b> 23 May 2013 07:29<br>
<b>To:</b> Ensembl developers list<br>
<b>Subject:</b> Re: [ensembl-dev] VEP check existing.<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">What's the field name on output?<br>
<br>
On 05/22/2013 06:50 PM, Duarte Molha wrote:<o:p></o:p></p>
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<p>In that case the field remains empty or with a dash of the
fields is part of the main annotation fields (the default
behavior) <o:p></o:p></p>
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<p class="MsoNormal">On 22 May 2013 16:45, "Guillermo Marco
Puche" <<a moz-do-not-send="true"
href="mailto:guillermo.marco@sistemasgenomicos.com">guillermo.marco@sistemasgenomicos.com</a>>
wrote:<o:p></o:p></p>
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<div>
<p class="MsoNormal">In case it doesn't exist what's the
behavior then?<br>
<br>
On 05/22/2013 05:20 PM, Duarte Molha wrote:<o:p></o:p></p>
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<p class="MsoNormal">It does exactly that ... it
checks Ensembl to find out if the variation you are
annotation has already been added to the database
(ie has a RS id identifier)<o:p></o:p></p>
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<p class="MsoNormal"><br clear="all">
<o:p></o:p></p>
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<p class="MsoNormal"><span style="color:#999999">=========================<br>
Duarte Miguel Paulo Molha </span><o:p></o:p></p>
<div>
<p class="MsoNormal"><span style="color:#999999">
<a moz-do-not-send="true"
href="http://about.me/duarte"
target="_blank">http://about.me/duarte</a>
<br>
=========================</span><o:p></o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><o:p> </o:p></p>
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<p class="MsoNormal">On Wed, May 22, 2013 at 4:09
PM, Guillermo Marco Puche <<a
moz-do-not-send="true"
href="mailto:guillermo.marco@sistemasgenomicos.com"
target="_blank">guillermo.marco@sistemasgenomicos.com</a>>
wrote:<o:p></o:p></p>
<div>
<p class="MsoNormal">Hello,<br>
<br>
I'm a bit in doubt with the follow VEP option,
--check_existing.<br>
<br>
I'm not really sure what it does. I've read the
description like a hundred times and i'm still
confused. If someone could explain this in
detail it would be awesome.<br>
<br>
<br>
Thank you.<br>
<br>
Best regards,<br>
Guillermo.<o:p></o:p></p>
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<br>
<o:p></o:p></p>
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<br>
<o:p></o:p></p>
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