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<p class="MsoNormal">Hi all,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I’ve set up an Ensembl mirror and it will run seemingly fine if run with the –X debug mode on httpd (apache2)<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">But running without this forced setting leads to httpd closeing as soon as perl.startup is finished. Before printing to the log file (with –e debug on)<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I have turned on these debug flags:<o:p></o:p></p>
<p class="MsoNormal">General errors, Drawing code, Sd autoloader, Handler errors, Long process, Perl profiler, Tree dumps, Referer, Magic messages, Javascript debug, Memcached, External commands, Wizard messages, Verbose startup.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">There are no errors thrown don’t get any appant fatal errors but it does give three warnings from the debug flags: <o:p></o:p></p>
<p class="MsoNormal">UNDEF ON DATAFILE_BASE_PATH [Homo_sapiens]. Called from /opt/Ensembl/modules/EnsEMBL/Web/SpeciesDefs.pm line 309<o:p></o:p></p>
<p class="MsoNormal">UNDEF ON ENSEMBL_MEMCACHED [Homo_sapiens]. Called from /opt/Ensembl/conf/perl.startup line 153<o:p></o:p></p>
<p class="MsoNormal">UNDEF ON LUCENE_ENDPOINT [Homo_sapiens]. Called from /opt/Ensembl/conf/perl.startup line 239<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">And one wanrning directly from the code <o:p></o:p></p>
<p class="MsoNormal">ENSEMBL_BLAST_METHODS config unavailable at /opt/Ensembl/modules/EnsEMBL/Web/BlastView/BlastDefs.pm line 66.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">These warnings don’t seem to be too troubling since i’m not using any file based data, Memcashed, lucene or blast functionality.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Are any of these features required to launch the mirror or is it something more fundamentally wrong with my apache/ensemble set up?<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Many Thanks,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Matt<o:p></o:p></p>
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