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<body>On Tue, 04 Jun 2013 02:22:29 +0100, Reece Hart <reece@harts.net> wrote:<br><br><blockquote style="margin: 0 0 0.80ex; border-left: #0000FF 2px solid; padding-left: 1ex"><div dir="ltr">What's the source of the refseq data in otherfeatures?
<div><br></div><div>How current is the otherfeatures data?</div></div></blockquote><div><br></div><div>The date of the last release is stored in the otherfeatures meta table with meta_key genebuild.last_otherfeatures_update </div><div><br></div><div>Typically the db_version in the analysis table should record the refseq version being used for the data. However, this may not have been captured for older releases. Data are downloaded from the NCBI website.<br></div><div><br></div><blockquote style="margin: 0 0 0.80ex; border-left: #0000FF 2px solid; padding-left: 1ex"><div dir="ltr"><div>What reconciliation is done when there are substitutions (e.g., VHL, TNFRSF10C, SERPINE2) or indels (NEFL, ABO, ZAN) in the transcript relative to GRCh37?</div>
<div><br></div><div>Thanks,</div><div>Reece</div><div><br></div></div>
</blockquote><br><br><br><div id="M2Signature"><div>-- </div><div>Rishi Nag<br>Ensembl Genebuilder<br>Wellcome Trust Sanger Institute<br><a href="http://ensembl.org">http://ensembl.org</a><br><br>Using Opera's mail client: <a href="http://www.opera.com/mail/">http://www.opera.com/mail/</a></div></div></body></html>