<div dir="ltr">Have you updated your API?<div><br></div><div style>It works OK for me, here's a snippet of the output I get from:</div><div style><br></div><div style>perl <a href="http://variant_effect_predictor.pl">variant_effect_predictor.pl</a> -i maf.vcf -gmaf -cache -force<br>
</div><div style><br></div><div style><div>#Uploaded_variation     Location        Allele  Gene    Feature Feature_type    Consequence     cDNA_position   CDS_position    Protein_position        Amino_acids     Codons  Existing_variation      Extra</div>
<div>17_41246532_T/- 17:41246532     -       ENSG00000012048 ENST00000352993 Transcript      intron_variant,feature_truncation       -       -       -       -       -       rs80357618,rs80357911,CD951606  CLIN_SIG=untested,untested</div>
<div><br></div><div style>Will</div></div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On 4 June 2013 12:10, Guillermo Marco Puche <span dir="ltr"><<a href="mailto:guillermo.marco@sistemasgenomicos.com" target="_blank">guillermo.marco@sistemasgenomicos.com</a>></span> wrote:<br>
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    <div>Hello Will,<br>
      <br>
      Try with this input:<br>
      <br>
      
      <a href="https://github.com/guillermomarco/vep_plugins_71/blob/master/wrong_gmaf/wrong.vcf" target="_blank">https://github.com/guillermomarco/vep_plugins_71/blob/master/wrong_gmaf/wrong.vcf</a><br>
      <br>
      Regards,<br>
      Guillermo.<div class="im"><br>
      <br>
      On 06/04/2013 10:05 AM, Will McLaren wrote:<br>
    </div></div><div class="im">
    <blockquote type="cite">
      <div dir="ltr">Hi Guillermo,
        <div><br>
        </div>
        <div>Can you provide some input that produces this problem?</div>
        <div><br>
        </div>
        <div>It works OK for me...</div>
        <div><br>
        </div>
        <div>Will</div>
      </div>
      <div class="gmail_extra">
        <br>
        <br>
        <div class="gmail_quote">On 3 June 2013 10:02, Guillermo Marco
          Puche <span dir="ltr"><<a href="mailto:guillermo.marco@sistemasgenomicos.com" target="_blank">guillermo.marco@sistemasgenomicos.com</a>></span>
          wrote:<br>
          <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
            <div bgcolor="#FFFFFF" text="#000066">
              <div>Hello Will,<br>
                <br>
                Are you sure bug was fixed? I'm getting some ":,:"
                outputs. I'm using tab delimited format not VCF as
                output.<br>
                <br>
                Regards,<br>
                Guillermo.
                <div>
                  <div><br>
                    <br>
                    On 05/22/2013 12:44 PM, Duarte Molha wrote:<br>
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                    <div dir="ltr">
                      <div class="gmail_extra"><br>
                        <div class="gmail_quote">On Wed, May 22, 2013 at
                          11:42 AM, Duarte Molha <span dir="ltr"><<a href="mailto:duartemolha@gmail.com" target="_blank">duartemolha@gmail.com</a>></span>
                          wrote:<br>
                          <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"> </blockquote>
                        </div>
                        <br>
                        Sorry will... replied essentially saying the
                        same thing you did... Should have refreshed my
                        email client before sending :)</div>
                      <div class="gmail_extra"><br>
                      </div>
                      <div class="gmail_extra">Thank you for the fix<br>
                        <br clear="all">
                        <div><font color="#999999">=========================<br>
                                 Duarte Miguel Paulo Molha      <br>
                          </font>
                          <div><font color="#999999">         <a href="http://about.me/duarte" target="_blank">http://about.me/duarte</a> 
                                     <br>
                              =========================</font></div>
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                </div>
              </blockquote>
            </div>
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    <br>
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