<html><head><meta http-equiv="Content-Type" content="text/html charset=iso-8859-1"><base href="x-msg://705/"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Beat<div>Thank you for reporting these issues. You are correct, we are missing the information you mentioned. We will try to rectify this as quickly as possible but it may take a day or two to generate and add to the live BioMart database. In the mean time, I will report the issue with the archive BioMart to our web team and hopefully you should be able to get the data from there until we reinstate the data. Apologies for any inconvenience caused and thanks again for reporting the bugs.</div><div>Regards</div><div>Rhoda</div><div><br></div><div><br><div><div>On 18 Jun 2013, at 19:13, Beat Wolf <<a href="mailto:wolf@fryx.ch">wolf@fryx.ch</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div style="font-size: 9pt; font-style: normal; font-variant: normal; font-weight: 400; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-family: Ubuntu; "><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">I also couldn't get the 71 archive to work. The url should be <a href="http://apr2013.archive.ensembl.org/biomart/">http://apr2013.archive.ensembl.org/biomart/</a></div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">right?</div><p style="white-space: pre-wrap; margin: 0px; text-indent: 0px; "> </p><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">The changelog doesn't seem to indicate that the functionality i need was <span style="color: rgb(31, 28, 27); background-color: rgb(255, 255, 255); ">removed. Also, in the changelog of </span><span style="font-size: 13px; color: rgb(31, 28, 27); background-color: rgb(255, 255, 255); ">Ensembl Genes 72</span><span style="color: rgb(31, 28, 27); background-color: rgb(255, 255, 255); ">there is this entry:</span></div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; "><span style="font-size: 13px; color: rgb(31, 28, 27); background-color: rgb(255, 255, 255); ">-Reinstated PolyPhen prediction and score filters and attributes</span><span style="color: rgb(31, 28, 27); background-color: rgb(255, 255, 255); "></span></div><p style="white-space: pre-wrap; margin: 0px; text-indent: 0px; "> </p><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">That should go into<span style="color: rgb(31, 28, 27); background-color: rgb(255, 255, 255); "> </span><span style="font-size: 13px; color: rgb(31, 28, 27); background-color: rgb(255, 255, 255); ">Ensembl Variation 72 i guess. Thank you for fixing that by the way, i reported that when 71 got online.</span></div><p style="white-space: pre-wrap; margin: 0px; text-indent: 0px; "> </p><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; "><span style="font-size: 13px; color: rgb(31, 28, 27); background-color: rgb(255, 255, 255); ">I hope the functionality lost this time can be recovered before the 73 release in a few months... quite some code depends on it. If at least the archive would work that would be perfect.</span></div><p style="white-space: pre-wrap; margin: 0px; text-indent: 0px; "> </p><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; "><span style="font-size: 13px; color: rgb(31, 28, 27); background-color: rgb(255, 255, 255); ">Thank you for your help</span></div><p style="white-space: pre-wrap; margin: 0px; text-indent: 0px; "> </p><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; "><span style="font-size: 13px; color: rgb(31, 28, 27); background-color: rgb(255, 255, 255); ">Greetings</span></div><p style="white-space: pre-wrap; margin: 0px; text-indent: 0px; "> </p><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; "><span style="font-size: 13px; color: rgb(31, 28, 27); background-color: rgb(255, 255, 255); ">Beat Wolf</span></div><p style="white-space: pre-wrap; margin: 0px; text-indent: 0px; "> </p><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">On Tuesday 18 June 2013 19.38:37 Beat Wolf wrote:</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> Hello,</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> </div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> i have a problem. In the new biomart update that just got out, i can't find</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> a way to get the following information on an exon:</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> </div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> 5_utr_start</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> 5_utr_end</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> 3_utr_start</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> 3_utr_end</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> genomic_coding_end</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> cdna_coding_start</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> cds_start</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> cds_end</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> </div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> Did it move to some place else? Where can i find this information? Thank you</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> for your help!</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> </div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> Best regards</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> </div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> Beat Wolf</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> </div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> _______________________________________________</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> Dev mailing list <a href="mailto:Dev@ensembl.org">Dev@ensembl.org</a></div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> Posting guidelines and subscribe/unsubscribe info:</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> <a href="http://lists.ensembl.org/mailman/listinfo/dev">http://lists.ensembl.org/mailman/listinfo/dev</a> Ensembl Blog:</div><div style="white-space: pre-wrap; margin: 0px; text-indent: 0px; ">> <a href="http://www.ensembl.info/">http://www.ensembl.info/</a></div>_______________________________________________<br>Dev mailing list <a href="mailto:Dev@ensembl.org">Dev@ensembl.org</a><br>Posting guidelines and subscribe/unsubscribe info:<span class="Apple-converted-space"> </span><a href="http://lists.ensembl.org/mailman/listinfo/dev">http://lists.ensembl.org/mailman/listinfo/dev</a><br>Ensembl Blog:<span class="Apple-converted-space"> </span><a href="http://www.ensembl.info/">http://www.ensembl.info/</a></div></blockquote></div><br><div>
<div>Rhoda Kinsella Ph.D.</div><div>Ensembl Production Project Leader,</div><div>European Bioinformatics Institute (EMBL-EBI),</div><div>Wellcome Trust Genome Campus,</div><div>Hinxton,</div><div>Cambridge,</div><div>CB10 1SD</div><div><br></div><br class="Apple-interchange-newline">
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