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<div class="moz-cite-prefix">Hello Duarte,<br>
<br>
Apologies for the late reply. I don't see a reply on the list, so
I will add an answer:<br>
<br>
The Ensembl database shows the alleles on the forward strand. In
NCBI dbSNP, the reverse strand is shown for that particular SNP.<br>
<br>
Best wishes,<br>
Giulietta<br>
<br>
On 23/05/2013 17:25, Duarte Molha wrote:<br>
</div>
<blockquote
cite="mid:CAGqkoEK=bDQmebzSdWToNhks2_9rGfDRwO7ihULhBgpqf4ziig@mail.gmail.com"
type="cite">
<div dir="ltr">
<div>Dear developers</div>
<div><br>
</div>
<div>I was wondering if someone could explain to me the
difference I see in this <span class="" style="">RSid</span></div>
<div><b
style="font-size:13px;font-family:arial,helvetica,sans-serif">rs4970378
</b><br>
</div>
<div><font face="arial, helvetica, sans-serif" color="#000000">in
the <span class="" style="">Ensembl</span> database and in
the <span class="" style="">NCBI</span> <span class=""
style="">snp</span> database</font></div>
<div>
<font face="arial, helvetica, sans-serif" color="#000000"><br>
</font></div>
<div><font face="arial, helvetica, sans-serif" color="#000000"><br>
</font></div>
<div><a moz-do-not-send="true"
href="http://www.ensembl.org/Homo_sapiens/Variation/Context?r=1:883125-884125;source=dbSNP;v=rs4970378;vdb=variation;vf=3859232"
target="_blank">http://www.<span class="" style="">ensembl</span>.org/Homo_<span
class="" style="">sapiens</span>/Variation/Context?r=1:883125-884125;source=<span
class="" style="">dbSNP</span>;v=rs4970378;<span class=""
style="">vdb</span>=variation;<span class="" style="">vf</span>=3859232</a><br>
</div>
<div><br>
</div>
<div><a moz-do-not-send="true"
href="http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=4970378"
target="_blank">http://www.<span class="" style="">ncbi</span>.<span
class="" style="">nlm</span>.<span class="" style="">nih</span>.gov/projects/<span
class="" style="">SNP</span>/<span class="" style="">snp</span>_ref.<span
class="" style="">cgi</span>?rs=4970378</a><br>
</div>
<div><br>
</div>
<div>in <span class="" style="">NCBI</span> the alleles are <span
style="font-size:13px;background-color:rgb(241,241,241);font-family:arial,helvetica,sans-serif">C/T</span></div>
<div><span class="" style="">ln</span> <span class="" style="">Ensembl</span>
they are AG<br>
</div>
<div><br>
</div>
<div style="">Why the discrepancy?</div>
<div style=""><br>
</div>
thanks
<div><br>
</div>
<div><span class="" style="">Duarte</span></div>
<div><br clear="all">
<div><font style="" color="#999999">=========================<br>
<span class="" style="">Duarte</span> Miguel Paulo <span
class="" style="">Molha</span> <br>
</font>
<div><font style="" color="#999999"> <a
moz-do-not-send="true" href="http://about.me/duarte"
target="_blank">http://about.me/<span class=""
style="">duarte</span></a> <br>
=========================</font></div>
</div>
</div>
</div>
<br>
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<br>
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</blockquote>
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