<div dir="ltr"><span style="font-family:arial,sans-serif;font-size:14px">There exist features outside the coordinates listed for HG375_PATCH. I'm wondering if this is expected or if this is an error.</span><br><div style="font-family:arial,sans-serif;font-size:14px">
<br></div><div style="font-family:arial,sans-serif;font-size:14px"><br></div><div style="font-family:arial,sans-serif;font-size:14px"><a href="ftp://ftp.ensembl.org/pub/release-72/fasta/homo_sapiens/dna/Homo_sapiens.GRCh37.72.dna.chromosome.HG375_PATCH.fa.gz" target="_blank">ftp://ftp.<span class="" style="background-color:rgb(255,255,204);color:rgb(34,34,34)">ensembl</span>.org/pub/release-72/fasta/homo_sapiens/dna/Homo_sapiens.GRCh37.72.dna.chromosome.HG375_PATCH.fa.gz</a></div>
<div style="font-family:arial,sans-serif;font-size:14px"><br></div><div style="font-family:arial,sans-serif;font-size:14px"><font face="courier new, monospace">zcat Homo_sapiens.GRCh37.72.dna.chromosome.HG375_PATCH.fa.gz | head -n1</font></div>
<div style="font-family:arial,sans-serif;font-size:14px"><font face="courier new, monospace">>HG375_PATCH dna:chromosome chromosome:GRCh37:HG375_PATCH:104423968:104489001:1 PATCH_FIX</font></div><div style="font-family:arial,sans-serif;font-size:14px">
<br></div><div style="font-family:arial,sans-serif;font-size:14px">Notice that the last position is 104489001.</div><div style="font-family:arial,sans-serif;font-size:14px"><br></div><div style="font-family:arial,sans-serif;font-size:14px">
<br></div><div style="font-family:arial,sans-serif;font-size:14px"><a href="ftp://ftp.ensembl.org/pub/release-72/gtf/homo_sapiens/Homo_sapiens.GRCh37.72.gtf.gz" target="_blank">ftp://ftp.<span class="" style="background-color:rgb(255,255,204);color:rgb(34,34,34)">ensembl</span>.org/pub/release-72/gtf/homo_sapiens/Homo_sapiens.GRCh37.72.gtf.gz</a></div>
<div style="font-family:arial,sans-serif;font-size:14px"><br></div><div style="font-family:arial,sans-serif;font-size:14px"><div><font face="courier new, monospace">zcat Homo_sapiens.GRCh37.72.gtf.gz | grep HG375_PATCH | cut -f1-5 | head</font></div>
<div><font face="courier new, monospace">HG375_PATCH<span style="white-space:pre-wrap"> </span>protein_coding<span style="white-space:pre-wrap"> </span>exon<span style="white-space:pre-wrap"> </span>103810996<span style="white-space:pre-wrap"> </span>103811732</font></div>
<div><font face="courier new, monospace">HG375_PATCH<span style="white-space:pre-wrap"> </span>protein_coding<span style="white-space:pre-wrap"> </span>exon<span style="white-space:pre-wrap"> </span>103903576<span style="white-space:pre-wrap"> </span>103903676</font></div>
<div><font face="courier new, monospace">HG375_PATCH<span style="white-space:pre-wrap"> </span>protein_coding<span style="white-space:pre-wrap"> </span>CDS<span style="white-space:pre-wrap"> </span>103903595<span style="white-space:pre-wrap"> </span>103903676</font></div>
<div><font face="courier new, monospace">HG375_PATCH<span style="white-space:pre-wrap"> </span>protein_coding<span style="white-space:pre-wrap"> </span>start_codon<span style="white-space:pre-wrap"> </span>103903595<span style="white-space:pre-wrap"> </span>103903597</font></div>
<div><font face="courier new, monospace">HG375_PATCH<span style="white-space:pre-wrap"> </span>protein_coding<span style="white-space:pre-wrap"> </span>exon<span style="white-space:pre-wrap"> </span>104440157<span style="white-space:pre-wrap"> </span>104440430</font></div>
<div><font face="courier new, monospace">HG375_PATCH<span style="white-space:pre-wrap"> </span>protein_coding<span style="white-space:pre-wrap"> </span>CDS<span style="white-space:pre-wrap"> </span>104440157<span style="white-space:pre-wrap"> </span>104440430</font></div>
<div><font face="courier new, monospace">HG375_PATCH<span style="white-space:pre-wrap"> </span>protein_coding<span style="white-space:pre-wrap"> </span>exon<span style="white-space:pre-wrap"> </span>104478500<span style="white-space:pre-wrap"> </span>104478686</font></div>
<div><font face="courier new, monospace">HG375_PATCH<span style="white-space:pre-wrap"> </span>protein_coding<span style="white-space:pre-wrap"> </span>CDS<span style="white-space:pre-wrap"> </span>104478500<span style="white-space:pre-wrap"> </span>104478686</font></div>
<div><font face="courier new, monospace">HG375_PATCH<span style="white-space:pre-wrap"> </span>protein_coding<span style="white-space:pre-wrap"> </span>exon<span style="white-space:pre-wrap"> </span>104512069<span style="white-space:pre-wrap"> </span>104512222</font></div>
<div><font face="courier new, monospace">HG375_PATCH<span style="white-space:pre-wrap"> </span>protein_coding<span style="white-space:pre-wrap"> </span>CDS<span style="white-space:pre-wrap"> </span>104512069<span style="white-space:pre-wrap"> </span>104512222</font></div>
</div><div style="font-family:arial,sans-serif;font-size:14px"><font face="courier new, monospace"><br></font></div><span style="font-family:arial,sans-serif;font-size:14px">Notice the positions such as 104512069 are greater than 104489001.</span><br>
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