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Hello,<br>
<br>
I recently updated to ensembl73 database. I've found the following
problem with Conservation plugin:<br>
<br>
<pre>Cannot find the core database of 'takifugu_rubripes' in the Registry. Be aware that getting Core objects from Compara is not possible for this species at /home/likewise-open/SGNET/gmarco/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/GenomeDB.pm line 444.</pre>
<pre>Cannot find the core database of 'ciona_savignyi' in the Registry. Be aware that getting Core objects from Compara is not possible for this species at /home/likewise-open/SGNET/gmarco/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/GenomeDB.pm line 444.</pre>
<pre>Cannot find the core database of 'macaca_mulatta' in the Registry. Be aware that getting Core objects from Compara is not possible for this species at /home/likewise-open/SGNET/gmarco/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/GenomeDB.pm line 444.</pre>
<pre>Cannot find the core database of 'echinops_telfairi' in the Registry. Be aware that getting Core objects from Compara is not possible for this species at /home/likewise-open/SGNET/gmarco/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/GenomeDB.pm line 444.</pre>
<pre>Cannot find the core database of 'gasterosteus_aculeatus' in the Registry. Be aware that getting Core objects from Compara is not possible for this species at /home/likewise-open/SGNET/gmarco/src/ensembl-compara/modules/Bio/EnsEMBL/Compara/GenomeDB.pm line 444.</pre>
(...)<br>
<pre>-------------------- WARNING ----------------------</pre>
<pre>MSG: Unable to find method_link_species_set with method_link_type of Conservation_score and species_set_tag value of mammals</pre>
<pre>
FILE: Compara/DBSQL/MethodLinkSpeciesSetAdaptor.pm LINE: 567</pre>
<pre>CALLED BY: vep_config/Plugins/Conservation.pm LINE: 82</pre>
<pre>Date (localtime) = Mon Oct 7 12:36:33 2013</pre>
<pre>Ensembl API version = 73</pre>
<pre>---------------------------------------------------</pre>
<pre>2013-10-07 12:36:33 - Failed to instantiate plugin Conservation: Failed to fetch MLSS for Conservation_score and mammals</pre>
<br>
Thank you.<br>
<br>
Best regards,<br>
Guillermo.<br>
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