<div dir="ltr">Hi Guys<div><br></div><div>Anyone seen this report? I am sure it is not very important but it is bound to cause issues for some users.</div><div><br></div><div>Best regards</div><div><br>Duarte</div><div><br>

</div></div><div class="gmail_extra"><br clear="all"><div><font style="background-color:rgb(255,255,255)" color="#999999">=========================<br>     Duarte Miguel Paulo Molha      <br></font><div><font style="background-color:rgb(255,255,255)" color="#999999">         <a href="http://about.me/duarte" target="_blank">http://about.me/duarte</a>         <br>

=========================</font></div></div>
<br><br><div class="gmail_quote">On Fri, Dec 6, 2013 at 1:41 PM, Duarte Molha <span dir="ltr"><<a href="mailto:Duarte.Molha@ogt.com" target="_blank">Duarte.Molha@ogt.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">

<div lang="EN-GB" link="blue" vlink="purple"><div><p class="MsoNormal">Dear developers <u></u><u></u></p><p class="MsoNormal"><u></u> <u></u></p><p class="MsoNormal">I found a typo in the documentation of VEP at: <a href="http://www.ensembl.org/info/docs/tools/vep/script/vep_cache.html#pre" target="_blank">http://www.ensembl.org/info/docs/tools/vep/script/vep_cache.html#pre</a><u></u><u></u></p>

<p class="MsoNormal"><u></u> <u></u></p><div style="border:solid #cccccc 1.0pt;padding:0cm 0cm 0cm 0cm;background:#f0f0f0"><pre style="margin-bottom:12.0pt;line-height:12.0pt;background:#f0f0f0;border:none;padding:0cm"><span style="color:#555555">wget <a href="ftp://ftp.ensembl.org/pub/release-74/fasta/homo_sapiens/dna/Homo_sapiens.GRCh27.74.dna.primary_assembly.fa.gz" target="_blank">ftp://ftp.ensembl.org/pub/release-74/fasta/homo_sapiens/dna/Homo_sapiens.GRCh27.74.dna.primary_assembly.fa.gz</a><u></u><u></u></span></pre>

<pre style="margin-bottom:12.0pt;line-height:12.0pt;background:#f0f0f0;border:none;padding:0cm"><span style="color:#555555">gzip -d Homo_sapiens.GRCh27.74.dna.primary_assembly.fa.gz<u></u><u></u></span></pre><pre style="margin-bottom:12.0pt;line-height:12.0pt;background:#f0f0f0;border:none;padding:0cm">

<span style="color:#555555">perl <a href="http://variant_effect_predictor.pl" target="_blank">variant_effect_predictor.pl</a> -i input.vcf --offline --hgvs --fasta Homo_sapiens.GRCh27.74.dna.primary_assembly.fa<u></u><u></u></span></pre>

</div><p class="MsoNormal"><u></u> <u></u></p><p class="MsoNormal">I believe the fasta file should be : <span style="color:#555555">Homo_sapiens.GRCh37.74.dna.primary_assembly.fa.gz  <u></u><u></u></span></p><p class="MsoNormal">

<span style="color:#555555"><u></u> <u></u></span></p><p class="MsoNormal"><span style="color:#555555">Best regards</span><span class="HOEnZb"><font color="#888888"><u></u><u></u></font></span></p><span class="HOEnZb"><font color="#888888"><p class="MsoNormal">

<u></u> <u></u></p><p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Arial","sans-serif"">Duarte Molha</span><span> <u></u><u></u></span></p><p class="MsoNormal"><u></u> <u></u></p></font></span></div>

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