<div dir="ltr">Hello Natasja,<div><br></div><div>I think you may have updated your script version to 74 but your API version is 73 or earlier - either run the INSTALL.pl script to update if you used that initially, or use CVS to update your Ensembl API checkout if you used CVS.</div>
<div><br></div><div>Regards</div><div><br></div><div>Will McLaren</div><div>Ensembl Variation</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On 11 December 2013 13:09, Natasja Spring Ehlers <span dir="ltr"><<a href="mailto:naspeh@cbs.dtu.dk" target="_blank">naspeh@cbs.dtu.dk</a>></span> wrote:<br>
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<span style="text-indent:0px;letter-spacing:normal;font-variant:normal;text-align:-webkit-auto;font-style:normal;font-weight:normal;line-height:normal;border-collapse:separate;text-transform:none;font-size:medium;white-space:normal;font-family:Helvetica;word-spacing:0px"><div style="word-wrap:break-word">
Dear developers list,</div><div style="word-wrap:break-word"><br></div><div style="word-wrap:break-word">I have been running the VEP script version 74 in the following way:</div><div style="word-wrap:break-word"><br></div>
<div style="word-wrap:break-word"> /tools/bin/perl /home/projects/pr_46298/naspeh/tools/variant_effect_predictor/variant_effect_predictor/<a href="http://variant_effect_predictor.pl" target="_blank">variant_effect_predictor.pl</a> --cache --dir_cache /home/projects/pr_46298/naspeh/tools/variant_effect_predictor/variant_effect_predictor/cache_dir/ -i $FILE -o $OUTFILE --sift p --polyphen p --humdiv --allele_number --numbers --symbol --protein --domains --regulatory --gmaf --maf_1kg --maf_esp --pubmed --vcf --plugin Conservation --force_overwrite</div>
<div style="word-wrap:break-word"><br></div><div style="word-wrap:break-word">but receives the error:</div><div style="word-wrap:break-word"><br></div><div style="word-wrap:break-word">"%COL_DESCS" is not exported by the Bio::EnsEMBL::Variation::Utils::VEP module</div>
<div style="word-wrap:break-word"><br></div><div style="word-wrap:break-word">Best,</div><div style="word-wrap:break-word">Natasja</div></span></div></span><br></span><br>
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