<div dir="ltr">Perfect. Thanks John</div><div class="gmail_extra"><br clear="all"><div><font style="background-color:rgb(255,255,255)" color="#999999">=========================<br> Duarte Miguel Paulo Molha <br></font><div>
<font style="background-color:rgb(255,255,255)" color="#999999"> <a href="http://about.me/duarte" target="_blank">http://about.me/duarte</a> <br>=========================</font></div></div>
<br><br><div class="gmail_quote">On Thu, Dec 12, 2013 at 4:02 PM, John Marshall <span dir="ltr"><<a href="mailto:jm18@sanger.ac.uk" target="_blank">jm18@sanger.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div class="im">On 12 Dec 2013, at 10:29, Will McLaren wrote:<br>
> These are not typos; Eclipse warns because VEP is setting a package-specific variable and Eclipse can't see that it is used within the relevant package - it only sees within the current open file. I have the same warnings in my IDE.<br>
<br>
</div>There's a number of possible workarounds, but perhaps the least obtuse would be to temporarily suppress this warning in these two places:<br>
<br>
{<br>
no warnings 'once';<br>
<div class="im"> # copy to Slice for offline sequence fetching<br>
$Bio::EnsEMBL::Slice::config = $config;<br>
}<br>
<br>
</div>Cheers,<br>
<br>
John<br>
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