<div dir="ltr">Hi Sarah, Will,<div><br></div><div style> Thanks a lot for the reply. It was the version issue. I updated the source code to API - 74 and got back the correct results.</div><div style><br></div><div style>
Thanks again.</div><div style>Regards,</div><div style><br></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Wed, Jan 29, 2014 at 5:14 PM, Will McLaren <span dir="ltr"><<a href="mailto:wm2@ebi.ac.uk" target="_blank">wm2@ebi.ac.uk</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi Ron,<div><br></div><div>The mapping provided by dbSNP changed between builds (137 in e!72 and 138 in e!74).</div>
<div><br></div><div>Here you can see the old position on the e!72 archive:</div><div><br></div>
<div><a href="http://e72.ensembl.org/Homo_sapiens/Variation/Summary?v=rs3064744" target="_blank">http://e72.ensembl.org/Homo_sapiens/Variation/Summary?v=rs3064744</a><br></div><div><br></div><div>Regards</div><span class="HOEnZb"><font color="#888888"><div>
<br></div><div>Will McLaren</div>
<div>Ensembl Variation</div></font></span></div><div class="gmail_extra"><br><br><div class="gmail_quote"><div><div class="h5">On 29 January 2014 11:29, Rohan M <span dir="ltr"><<a href="mailto:rohan7799@gmail.com" target="_blank">rohan7799@gmail.com</a>></span> wrote:<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5"><div dir="ltr"><div>Hi All,</div><div><br></div><div> I'm using the code snippet given at by ensemble api tutorial, under the section - "Variations, Flanking sequences and Genes" <a href="http://asia.ensembl.org/info/docs/api/variation/variation_tutorial.html" target="_blank">http://asia.ensembl.org/info/docs/api/variation/variation_tutorial.html</a></div>
<div> I added api version line to the original code and I'm running the script for dbsnp ID 'rs3064744'<br></div><div><br></div><div>Here is the output - <br></div><div><br></div><div><div>The API version used is 72</div>
<div>rs3064744,-/TA,NMD_transcript_variant,5_prime_UTR_variant,intron_variant,downstream_gene_variant,upstream_gene_variant,feature_elongation,regulatory_region_variant,TATATATATA[-/TA]AGTAGGAGAG,2:234668895-234668894,,ENSG00000242515,,ENSG00000244474,,ENSG00000167165,,ENSG00000243135,,ENSG00000167165,,ENSG00000178836,,ENSG00000167165,,ENSG00000178836,,ENSG00000167165,,ENSG00000244122,,ENSG00000244474,,ENSG00000241635,,ENSG00000240224,,ENSG00000167165,,ENSG00000178836,,ENSG00000241635,,ENSG00000242366,,ENSG00000242515,,ENSG00000178836,,ENSG00000241119,,ENSG00000167165</div>
</div><div><br></div><div><br></div><div>Why does the location retrieved ( 2:234668895-234668894 ) is not matching with the one present on the web?</div><div>On the web interface it says - Chromosome <b>2</b>: between <b>234668880</b> and <b>234668881</b><br>
</div><div><b><br></b></div><a href="http://asia.ensembl.org/Homo_sapiens/Variation/Summary?r=2:234668381-234669380;v=rs3064744;vdb=variation;vf=2706024" target="_blank">http://asia.ensembl.org/Homo_sapiens/Variation/Summary?r=2:234668381-234669380;v=rs3064744;vdb=variation;vf=2706024</a><div>
<br></div><div>Could somebody explain what is wrong?</div><div><br></div><div>Thanks,</div><div><br clear="all"><div>--</div><div>Ron</div><div><span style="line-height:32px;font-size:large"><br>
</span></div>
</div></div>
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