<div dir="ltr">Hi Guillermo<div><br></div><div>Ensembl Variation does not have any tissue-specific information available I'm afraid.</div><div><br></div><div>The Core database offers tissue-specific RNASeq data, while the Regulation database carries cell-specific regulatory features (which you can access using --cell_type in the VEP). You might like to investigate these further to see if they might help you.</div>
<div><br></div><div>Regards</div><div><br></div><div>Will McLaren</div><div>Ensembl Variation</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On 10 February 2014 09:37, Guillermo Marco Puche <span dir="ltr"><<a href="mailto:guillermo.marco@sistemasgenomicos.com" target="_blank">guillermo.marco@sistemasgenomicos.com</a>></span> wrote:<br>
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<font size="-1">Hello,<br>
<br>
I'm looking for tissue information for variants. I would like to
know if it's possible to extract this information from Ensembl
variation DB schema so I can write a VEP plugin to output this
information.<br>
<br>
Thank you !<br>
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<p> <span style="font-size:12px">Guillermo Marco Puche<br>
Bioinformatician, Computer Science Engineer.<br>
Sistemas Genómicos S.L.<br>
Phone: <a href="tel:%2B34%20902%20364%20669" value="+34902364669" target="_blank">+34 902 364 669</a> (Ext.777)<br>
Fax: <a href="tel:%2B34%20902%20364%20670" value="+34902364670" target="_blank">+34 902 364 670</a><br>
<a href="http://www.sistemasgenomicos.com" target="_blank">www.sistemasgenomicos.com</a></span><span style="font-size:11px"></span></p>
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<p> <span style="font-size:10px"><a href="https://www.sistemasgenomicos.com/web_sg/web/areas-bioinformatica.php" target="_blank"> <img alt="" src="cid:part2.02030409.00020109@sistemasgenomicos.com" style="min-height:100px;width:250px"> </a></span></p>
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