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Hi Daniel,<br>
<br>
The two RefSeq entries you are referring to have been last updated
early February 2014 and mention a paper from late January 2014.<br>
Could it be that these entries have only been recently created,
hence would not have made it in our database at the time of update?<br>
<br>
The RefSeq track displayed in Ensembl 75 was updated end of last
year, so any more recent RefSeq entries would not be included here.<br>
<br>
<br>
Regards,<br>
Magali<br>
<br>
<div class="moz-cite-prefix">On 27/02/2014 19:15, Caffrey, Daniel
wrote:<br>
</div>
<blockquote
cite="mid:49AFC403-426E-4298-B964-17C7EA32EE94@umassmed.edu"
type="cite">
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Hi,
<div><br>
</div>
<div>Does anyone know why the following refseq
sequences/alignments do not appear in version 75 (or other
versions) of the cDNAs (Refseq/ENA) track on the location tabs</div>
<div><br>
</div>
<div>
<div>REFSEQ: NR_110420</div>
</div>
<div>mouse 1:150159043-150164948</div>
<div><br>
</div>
<div> </div>
<div><br>
</div>
<div>REFSEQ: NR_110375</div>
<div>human: 12:125509989-125511939</div>
<div><br>
</div>
<div>There appear to be similar issues with other transcripts -
They are all lincRNAs and perhaps this is the reason?</div>
<div><br>
</div>
<div> Related to this, I know there are at least 3 splice
variants/transcripts for the mouse gene in genbank (<span
style="font-family: AdvTT3713a231; font-size: 9pt; ">JX682706,
JX682707, and JX682708)</span><font size="3"
face="AdvTT3713a231"> but Ensembl/gencode only lists a </font><font
face="AdvTT3713a231">single</font><font size="3"
face="AdvTT3713a231"> transcript </font>ENSMUST00000181308.
Presumably cDNA data is sufficient evidence for inclusion within
gencode?</div>
<div><br>
</div>
<div>Thanks</div>
<div><br>
<div apple-content-edited="true">
<div>Daniel <br>
</div>
<br class="Apple-interchange-newline">
</div>
<br>
</div>
<br>
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</blockquote>
<br>
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