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<div class="moz-cite-prefix">Hi,<br>
<br>
Apologies, the 75 databases are not yet on useastdb. We'll let you
know as soon as they are.<br>
<br>
Regards,<br>
<br>
Steve<br>
<br>
On 28/02/2014 12:39, Genomeo Dev wrote:<br>
</div>
<blockquote
cite="mid:CAKry3c2EEEokDvZH-EvmC=zeCXT75+26PyXHtBENG6AYBO03tQ@mail.gmail.com"
type="cite">
<div dir="ltr">Hi,
<div><br>
</div>
<div>I was using <a moz-do-not-send="true"
href="http://useastdb.ensembl.org">useastdb.ensembl.org</a>.
<a moz-do-not-send="true" href="http://ensembldb.ensembl.org">ensembldb.ensembl.org</a>
works but is heavily slow at the moment.</div>
<div><br>
</div>
<div>Thanks</div>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">On 28 February 2014 12:04, Kieron
Taylor <span dir="ltr"><<a moz-do-not-send="true"
href="mailto:ktaylor@ebi.ac.uk" target="_blank">ktaylor@ebi.ac.uk</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">Hi,<br>
<br>
This error is commonly caused by absent databases. If you're
not using <a moz-do-not-send="true"
href="http://ensembldb.ensembl.org" target="_blank">ensembldb.ensembl.org</a>,
then you may not have release 75 databases available for
Human and others on your server of choice.<br>
<br>
Our master copy of the VM checks out ok. Please investigate
your configuration, to see whether you need to aim for a
server that contains release 75.<br>
<br>
<br>
Regards,<br>
<br>
Kieron Taylor<br>
<br>
Ensembl Core
<div class=""><br>
<br>
On 28/02/2014 10:26, Genomeo Dev wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div class="">
Hi,<br>
<br>
I just loaded the new release VM 75.<br>
<br>
~/verify-installation worked fine.<br>
<br>
But:<br>
<br>
use Bio::EnsEMBL::Registry;<br>
my $registry = 'Bio::EnsEMBL::Registry';<br>
my $gene_adaptor = $registry->get_adaptor( 'Human',
'Core', 'Gene' );<br>
<br>
gives me this error:<br>
<br>
-------------------- WARNING ----------------------<br>
MSG: Human is not a valid species name (check DB and API
version)<br>
FILE: Bio/EnsEMBL/Registry.pm LINE: 1198<br>
CALLED BY: Bio/EnsEMBL/Registry.pm LINE: 983<br>
Date (localtime) = Fri Feb 28 10:20:41 2014<br>
Ensembl API version = 75<br>
---------------------------------------------------<br>
<br>
-------------------- EXCEPTION --------------------<br>
MSG: Can not find internal name for species 'Human'<br>
STACK Bio::EnsEMBL::Registry::get_adaptor<br>
/home/ensembl/ensembl-api-folder/ensembl/modules/Bio/EnsEMBL/Registry.pm:985<br>
STACK toplevel ./<a moz-do-not-send="true"
href="http://fetch_ensembl_genes_v3b.pl:71"
target="_blank">fetch_ensembl_genes_v3b.pl:71</a><br>
</div>
<<a moz-do-not-send="true"
href="http://fetch_ensembl_genes_v3b.pl:71"
target="_blank">http://fetch_ensembl_genes_v3b.pl:71</a>>
<div class=""><br>
Date (localtime) = Fri Feb 28 10:20:41 2014<br>
Ensembl API version = 75<br>
---------------------------------------------------<br>
<br>
Any suggestions please?<br>
<br>
--<br>
G.<br>
</div>
</blockquote>
<br>
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</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
<div dir="ltr">G.</div>
</div>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
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