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Hi Magali,
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<div>If Ensembl 75 is using refseq sequences from December this probably explains the missing refseqs. However, the genbank/ENA accessions (<span style="font-family: AdvTT3713a231; font-size: 9pt; ">JX682706, JX682707, and JX682708)</span><font size="3" face="AdvTT3713a231"> </font> were
released in Aug 2013 . As the track is named refseq/ ENA I would expect them to be included (assuming version 75 is using ENA from December '13). </div>
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<div>Thanks,</div>
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<div>Daniel <br>
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<div>On Feb 28, 2014, at 6:44 AM, mag <<a href="mailto:mr6@ebi.ac.uk">mr6@ebi.ac.uk</a>> wrote:</div>
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<div text="#000000" bgcolor="#FFFFFF">Hi Daniel,<br>
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The two RefSeq entries you are referring to have been last updated early February 2014 and mention a paper from late January 2014.<br>
Could it be that these entries have only been recently created, hence would not have made it in our database at the time of update?<br>
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The RefSeq track displayed in Ensembl 75 was updated end of last year, so any more recent RefSeq entries would not be included here.<br>
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Regards,<br>
Magali<br>
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<div class="moz-cite-prefix">On 27/02/2014 19:15, Caffrey, Daniel wrote:<br>
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<blockquote cite="mid:49AFC403-426E-4298-B964-17C7EA32EE94@umassmed.edu" type="cite">
Hi,
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<div>Does anyone know why the following refseq sequences/alignments do not appear in version 75 (or other versions) of the cDNAs (Refseq/ENA) track on the location tabs</div>
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<div>REFSEQ: NR_110420</div>
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<div>mouse 1:150159043-150164948</div>
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<div>REFSEQ: NR_110375</div>
<div>human: 12:125509989-125511939</div>
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<div>There appear to be similar issues with other transcripts - They are all lincRNAs and perhaps this is the reason?</div>
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<div> Related to this, I know there are at least 3 splice variants/transcripts for the mouse gene in genbank (<span style="font-family: AdvTT3713a231; font-size: 9pt; ">JX682706, JX682707, and JX682708)</span><font size="3" face="AdvTT3713a231"> but Ensembl/gencode
only lists a </font><font face="AdvTT3713a231">single</font><font size="3" face="AdvTT3713a231"> transcript </font>ENSMUST00000181308. Presumably cDNA data is sufficient evidence for inclusion within gencode?</div>
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<div>Thanks</div>
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<div>Daniel <br>
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