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Hi Will,<br>
<br>
The markers currently stored in the core databases are being loaded
using the scripts in<br>
ensembl-analysis/scripts/markers<br>
This does not use the API.<br>
<br>
<br>
Regards,<br>
Magali<br>
<br>
<div class="moz-cite-prefix">On 28/02/2014 16:00, Will Chow wrote:<br>
</div>
<blockquote
cite="mid:815E2D71-DCD5-4CBB-820B-BB46979D7E95@sanger.ac.uk"
type="cite">
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Hi Dev'ers,
<div><br>
</div>
<div>I'm trying to store some Marker data in to a ensembl schema
database using the API.</div>
<div><br>
</div>
<div>I've created the marker features as per.</div>
<div>
<pre class="fragment"><font face="Courier New"> $marker = Bio::EnsEMBL::<a class="moz-txt-link-freetext" href="Map::Marker">Map::Marker</a>->new
(undef, undef,
$left_primer, $right_primer, 400,
80, $ms1, [$ms1, $ms2], [$mloc1, $mloc2]);</font></pre>
<div>added the marker synonyms and marker_map_locations (e.g. ms
& msloc);</div>
</div>
<div><br>
</div>
<div>then i guess would use the <font face="Courier New">marker_adaptor->store($marker);</font></div>
<div><br>
</div>
<div>however looking at the MarkerAdaptor.pm code for the store
call, Line 405</div>
<div><font face="Courier New"><br>
</font></div>
<div>
<div><font face="Courier New"> 403 # Loop through all
MapLocations and store if needed</font></div>
<div><font face="Courier New"> 404 foreach my $loc(
@{$marker->get_all_MapLocations} ){</font></div>
<div><font face="Courier New"> 405 # <font
color="#e32400">Dunno how to implement this :( Just bomb
out</font></font></div>
<div><font face="Courier New"> 406 $self->throw(
'Storing of MapLocation objects is not yet implemented' )</font></div>
<div><font face="Courier New"> 407 }</font></div>
</div>
<div><font face="Courier New"><br>
</font></div>
<div>Does this mean the MapLocations which I've linked to the
marker feature won't be stored? Has anyone used the API to store
marker data?</div>
<div><br>
</div>
<div>Or maybe its just friday, and I've stared at the code for too
long this week.</div>
<div><br>
</div>
<div><br>
</div>
<div>thanks,</div>
<div><br>
</div>
<div>Will</div>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
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</pre>
</blockquote>
<br>
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