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<p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";mso-bidi-font-family:"Times New Roman";color:#1F497D">Careful there, since, you might not get the response your application needs
if you have “too many” queries, due to throttling at, if memory serves, three queries per second.<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="2" color="#1f497d" face="Calibri"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";mso-bidi-font-family:"Times New Roman";color:#1F497D"><o:p> </o:p></span></font></p>
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<p class="MsoNormal"><b><font size="2" color="black" face="Tahoma"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif";mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight:bold">From:</span></font></b><font size="2" color="black" face="Tahoma"><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif";mso-fareast-font-family:"Times New Roman";color:windowtext">
dev-bounces@ensembl.org [mailto:dev-bounces@ensembl.org] <b><span style="font-weight:bold">On Behalf Of
</span></b>Saren Tasciyan<br>
<b><span style="font-weight:bold">Sent:</span></b> Monday, May 19, 2014 8:02 AM<br>
<b><span style="font-weight:bold">To:</span></b> dev@ensembl.org<br>
<b><span style="font-weight:bold">Subject:</span></b> Re: [ensembl-dev] REST API: Feature ID returns multiple results<o:p></o:p></span></font></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt"><o:p> </o:p></span></font></p>
<p class="MsoNormal" style="margin-bottom:12.0pt"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt;mso-fareast-font-family:"Times New Roman"">This allows me to filter unwanted results out. I can ignore entries with different
IDs.<br>
This approach seems to be working perfectly. Also my understanding for the usage of feature=... was a bit wrong.<br>
<br>
Thanks a lot Magali!<br>
<br>
Saren<o:p></o:p></span></font></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt;mso-fareast-font-family:"Times New Roman"">Am 19.05.2014 12:29, schrieb mag:<o:p></o:p></span></font></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt;mso-fareast-font-family:"Times New Roman"">Hi Saren,<br>
<br>
The feature look up will return all features of the given object type that overlap your queried region.<br>
<br>
In your example, the region is the input gene and two transcripts overlap this region.<br>
<br>
To retrieve the gene linked to a transcript, I would recommend using 'feature=transcript' instead<br>
Among the fields returned, there is a 'Parent' field that will specify which gene the transcript belongs to.<br>
<br>
<a href="http://beta.rest.ensembl.org/feature/id/ENSMUST00000163188?feature=transcript;content-type=text/xml">http://beta.rest.ensembl.org/feature/id/ENSMUST00000163188?feature=transcript;content-type=text/xml</a><br>
</span></font><font size="2" color="#881280" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman";color:#881280"><data<span class="apple-converted-space"> </span><span class="webkit-html-attribute-name">ID</span><span class="webkit-html-attribute">="</span><span class="webkit-html-attribute-value">ENSMUST00000163188</span><span class="webkit-html-attribute">"</span><span class="apple-converted-space"> </span><span class="webkit-html-attribute-name">Parent</span><span class="webkit-html-attribute">="</span><span class="webkit-html-attribute-value">ENSMUSG00000057729</span><span class="webkit-html-attribute">"</span><span class="apple-converted-space"> </span><span class="webkit-html-attribute-name">biotype</span><span class="webkit-html-attribute">="</span><span class="webkit-html-attribute-value">processed_transcript</span><span class="webkit-html-attribute">"</span><span class="apple-converted-space"> </span><span class="webkit-html-attribute-name">description</span><span class="webkit-html-attribute">=""</span><span class="apple-converted-space"> </span><span class="webkit-html-attribute-name">end</span><span class="webkit-html-attribute">="</span><span class="webkit-html-attribute-value">79883041</span><span class="webkit-html-attribute">"</span><span class="apple-converted-space"> </span><span class="webkit-html-attribute-name">external_name</span><span class="webkit-html-attribute">="</span><span class="webkit-html-attribute-value">Prtn3-004</span><span class="webkit-html-attribute">"</span><span class="apple-converted-space"> </span><span class="webkit-html-attribute-name">feature_type</span><span class="webkit-html-attribute">="</span><span class="webkit-html-attribute-value">transcript</span><span class="webkit-html-attribute">"</span><span class="apple-converted-space"> </span><span class="webkit-html-attribute-name">logic_name</span><span class="webkit-html-attribute">="</span><span class="webkit-html-attribute-value">havana</span><span class="webkit-html-attribute">"</span><span class="webkit-html-attribute-name">seq_region_name</span><span class="webkit-html-attribute">="</span><span class="webkit-html-attribute-value">10</span><span class="webkit-html-attribute">"</span><span class="apple-converted-space"> </span><span class="webkit-html-attribute-name">source</span><span class="webkit-html-attribute">="</span><span class="webkit-html-attribute-value">ensembl_havana</span><span class="webkit-html-attribute">"</span><span class="apple-converted-space"> </span><span class="webkit-html-attribute-name">start</span><span class="webkit-html-attribute">="</span><span class="webkit-html-attribute-value">79874476</span><span class="webkit-html-attribute">"</span><span class="apple-converted-space"> </span><span class="webkit-html-attribute-name">strand</span><span class="webkit-html-attribute">="</span><span class="webkit-html-attribute-value">1</span><span class="webkit-html-attribute">"</span>/><br>
<br>
</span></font><span style="mso-fareast-font-family:"Times New Roman"">This will still return more transcripts than your input, but you will be able to uniquely associate each transcript to its gene.<br>
<br>
<br>
Hope that helps,<br>
Magali<o:p></o:p></span></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt;mso-fareast-font-family:"Times New Roman"">On 19/05/2014 10:00, Saren Tasciyan wrote:<o:p></o:p></span></font></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt;mso-fareast-font-family:"Times New Roman"">Hi,<br>
<br>
I am using REST API for my Java application, however I am stuck with a problem:<br>
I have a list of transcript IDs (ENSMUST....) from which, I want to gather gene IDs. So I have decided to use following endpoint:<br>
<a href="http://beta.rest.ensembl.org">http://beta.rest.ensembl.org</a><b><span style="font-weight:bold">/feature/id/ENSMUST00000163188?feature=gene</span></b>;content-type=text/xml<br>
as you can see that this returns 2 IDs:<o:p></o:p></span></font></p>
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<p class="MsoNormal"><span class="webkit-html-tag"><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""><data</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">ID</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">ENSMUSG00000035835</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">biotype</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">protein_coding</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">description</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">cDNA
sequence BC005764 [Source:MGI Symbol;Acc:MGI:2388640]</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">end</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">79874634</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">external_name</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">BC005764</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">feature_type</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">gene</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">logic_name</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">ensembl_havana_gene</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">seq_region_name</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">10</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">source</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">ensembl_havana</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">start</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">79860475</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">strand</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">-1</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="webkit-html-tag"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">/></span></font></span><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""><o:p></o:p></span></font></p>
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<p class="MsoNormal"><span class="webkit-html-tag"><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""><data</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">ID</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">ENSMUSG00000057729</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">biotype</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">protein_coding</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">description</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">proteinase
3 [Source:MGI Symbol;Acc:MGI:893580]</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">end</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">79883174</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">external_name</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">Prtn3</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">feature_type</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">gene</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">logic_name</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">ensembl_havana_gene</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">seq_region_name</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">10</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">source</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">ensembl_havana</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">start</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">79874476</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="apple-converted-space"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""> </span></font></span><span class="webkit-html-attribute-name"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">strand</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">="</span></font></span><span class="webkit-html-attribute-value"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">1</span></font></span><span class="webkit-html-attribute"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">"</span></font></span><span class="webkit-html-tag"><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman"">/></span></font></span><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""><o:p></o:p></span></font></p>
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<p class="MsoNormal"><span class="webkit-html-tag"><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""></opt></span></font></span><font size="2" face="Courier New"><span style="font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family:"Times New Roman""><o:p></o:p></span></font></p>
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When queried from Ensembl website I "only" get one result:<br>
<a href="http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000057729;r=10:79874476-79883041;t=ENSMUST00000163188">http://www.ensembl.org/Mus_musculus/Transcript/Summary?db=core;g=ENSMUSG00000057729;r=10:79874476-79883041;t=ENSMUST00000163188</a><br>
<br>
My idea, when I first ran into this problem was to use logic_name as an indicator, as this problem is even more frequent with ncrna, etc. However both results here have same logic_name.<br>
Correct results would be "according to my dataset" the second one. Am I using a wrong approach here or should I include more parameters in my query?<br>
<br>
As an example here are more queries with multiple results:<br>
<a href="http://beta.rest.ensembl.org/feature/id/ENSMUST00000040746?feature=gene;content-type=text/xml">http://beta.rest.ensembl.org/feature/id/ENSMUST00000040746?feature=gene;content-type=text/xml</a><br>
<a href="http://beta.rest.ensembl.org/feature/id/ENSMUST00000075162?feature=gene;content-type=text/xml">http://beta.rest.ensembl.org/feature/id/ENSMUST00000075162?feature=gene;content-type=text/xml</a><br>
<a href="http://beta.rest.ensembl.org/feature/id/ENSMUST00000080673?feature=gene;content-type=text/xml">http://beta.rest.ensembl.org/feature/id/ENSMUST00000080673?feature=gene;content-type=text/xml</a><br>
<a href="http://beta.rest.ensembl.org/feature/id/ENSMUST00000118639?feature=gene;content-type=text/xml">http://beta.rest.ensembl.org/feature/id/ENSMUST00000118639?feature=gene;content-type=text/xml</a><br>
<br>
Cheers,<br>
Saren<o:p></o:p></span></font></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt;mso-fareast-font-family:"Times New Roman"">--
<br>
Saren Tasciyan<br>
<br>
Master Student & IT Technician at Karl Kuchler Group<br>
Room: 2.107<br>
<br>
Max F. Perutz Laboratories GmbH<br>
Dr. Bohr-Gasse 9<br>
A-1030 Wien<br>
<br>
T: +43-1-4277- 61812<br>
E: <a href="mailto:saren.tasciyan@univie.ac.at">saren.tasciyan@univie.ac.at</a><o:p></o:p></span></font></p>
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<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt;mso-fareast-font-family:"Times New Roman""><br>
<br style="mso-special-character:line-break">
<![if !supportLineBreakNewLine]><br style="mso-special-character:line-break">
<![endif]><o:p></o:p></span></font></p>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">_______________________________________________<o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">Dev mailing list<span style="mso-spacerun:yes"> </span><span style="mso-spacerun:yes"> </span><a href="mailto:Dev@ensembl.org">Dev@ensembl.org</a><o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev">http://lists.ensembl.org/mailman/listinfo/dev</a><o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">Ensembl Blog: <a href="http://www.ensembl.info/">http://www.ensembl.info/</a><o:p></o:p></span></font></pre>
</blockquote>
<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt;mso-fareast-font-family:"Times New Roman""><br>
<br>
<br style="mso-special-character:line-break">
<![if !supportLineBreakNewLine]><br style="mso-special-character:line-break">
<![endif]><o:p></o:p></span></font></p>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">_______________________________________________<o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">Dev mailing list<span style="mso-spacerun:yes"> </span><a href="mailto:Dev@ensembl.org">Dev@ensembl.org</a><o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">Posting guidelines and subscribe/unsubscribe info: <a href="http://lists.ensembl.org/mailman/listinfo/dev">http://lists.ensembl.org/mailman/listinfo/dev</a><o:p></o:p></span></font></pre>
<pre><font size="2" color="black" face="Courier New"><span style="font-size:10.0pt">Ensembl Blog: <a href="http://www.ensembl.info/">http://www.ensembl.info/</a><o:p></o:p></span></font></pre>
</blockquote>
<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt;mso-fareast-font-family:"Times New Roman""><o:p> </o:p></span></font></p>
<div>
<p class="MsoNormal"><font size="3" color="black" face="Times New Roman"><span style="font-size:12.0pt;mso-fareast-font-family:"Times New Roman"">--
<br>
Saren Tasciyan<br>
<br>
Master Student & IT Technician at Karl Kuchler Group<br>
Room: 2.107<br>
<br>
Max F. Perutz Laboratories GmbH<br>
Dr. Bohr-Gasse 9<br>
A-1030 Wien<br>
<br>
T: +43-1-4277- 61812<br>
E: <a href="mailto:saren.tasciyan@univie.ac.at">saren.tasciyan@univie.ac.at</a><o:p></o:p></span></font></p>
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